Detail information of GWHGAAEX013497/evm.TU.scaffold_50.109


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19952.00E-132Conserved Zn-finger protein
nrgi|502144779|ref|XP_004505747.1|1.88E-156PREDICTED: TATA-binding protein-associated factor 2N-like isoform X4 [Cicer arietinum]
Swissprottr|Q9AST1|TAF15_ARATH6.00E-133Transcription initiation factor TFIID subunit 15
trEMBLtr|A0A067JGB5|A0A067JGB5_JATCU1.00E-152Uncharacterized protein {ECO:0000313|EMBL:KDP22966.1}
TAIRAT1G503002.00E-132TBP-associated factor 15

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005322564202271819+
Transcript Sequence

Network for GWHGAAEX013497

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_114915.60E-06
PF00641.17zf-RanBP1461756.20E-06
PF00641.17zf-RanBP2172430.00014
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms37.150
SRR2545915Juvenile tuber18.510
SRP108465SRR5643513five period of Gastrodia elata24.190
SRR5643514five period of Gastrodia elata18.900
SRR5643515five period of Gastrodia elata19.810
SRR5643524five period of Gastrodia elata20.760
SRR5643525five period of Gastrodia elata31.590
SRR5643528five period of Gastrodia elata27.770
SRR5643658five period of Gastrodia elata26.230
SRR5643659five period of Gastrodia elata23.710
SRR5643660five period of Gastrodia elata28.260
SRR5643661five period of Gastrodia elata21.770
SRR5643662five period of Gastrodia elata25.010
SRR5643663five period of Gastrodia elata25.450
SRR5643664five period of Gastrodia elata23.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.880
SRR6049655Rhizomagastrodiae_C368-T10_good_124.650
SRR6049656Rhizomagastrodiae_C368-T07_good_119.210
SRR6049657Rhizomagastrodiae_C368-T07_good_137.420
SRR6049658Rhizomagastrodiae_C368-T04_good_136.040
SRR6049659Rhizomagastrodiae_C368-T04_good_139.770
SRR6049660Rhizomagastrodiae_C368-T01_good_126.500
SRR6049661Rhizomagastrodiae_C368-T04_good_129.480
SRR6049662Rhizomagastrodiae_C368-T01_good_116.810
SRR6049663Rhizomagastrodiae_C368-T01_good_117.350
SRR6049664Rhizomagastrodiae_C368-T10_good_114.510
SRR6049665Rhizomagastrodiae_C368-T10_good_114.510
SRP279888GastroGastrodia elata tuber 27.57
JuvenJuvenile tuber40.34
Mother_GastroMother tuber of Gastrodia elata 29.65
Mother_JuvenMother tuber of Juvenile 39.22