Gene detail

Detail information of GWHGAAEX013499/evm.TU.scaffold_50.111

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743849595\|ref\|XP_010939666.1\|	4.38E-137	PREDICTED: uncharacterized protein LOC105058428 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9LME6\|MBD8_ARATH	2.00E-29	Methyl-CpG-binding domain-containing protein 8
trEMBL	tr\|M0TIV0\|M0TIV0_MUSAM	8.00E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P19130_001}
trEMBL	tr\|M0TIV0\|M0TIV0_MUSAM	5.00E-15	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P19130_001}
TAIR	AT1G22310	8.00E-29	methyl-CPG-binding domain 8

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	2294267	2317087	-

Transcript Sequence
>GWHTAAEX013499 GTTCAAGTGGTTGGATGGATTGTAGGAATAAAAATACTCGAATTTTCCGTTTGATCGTTAAGTTTTGATAGGCATTAACCCGCTGAATCACGGACGCCTTCTTCCTCCTTCATCGCGGGCATGGTGACTGACCTAATTCCGGTGGTTGATCTGCGCTTCCTCTCTCAGACAGAACTCGCAGCTCTAGCGTTGTCCTCTTCCAACGCCTTCGATCTTCGGCGCTGCGACGACGTCGTCGTTCCCAAAATCGACCGGTCCGTCTTCAATGAGAGCGCCGGAAGCAGGAAGCAGACTTACTCTCGCTTCCGCCTCGCCTCTCCCAAGCCTGACTCCCCTTCCCTTCCATCATCTCTTTCGCGCCGCCGAGGCCGTCCTCGCTCTATACCGCTCCCAAACTCCGATCGTCCCGCCTCCGACGACCCCAAAAGCGATCCCGATCGCCGCGAGAATGTACTCATCGCGTCATTCCTCCGCCAGCTATTTTCCCCCGAGGATCCATCGTCCCAGAACCCCCCACCCCTAAGCAACCCTGTTTCCACCAGCGTCTGTGCTGATGAAAAAAATGATGGCTGGAAAAGCATTCTTGCTGCTGCGGAGGAAGCGCAGAAGGCCTTGGTCATTGAGGAGGACCGGGATCGGGATCGGGAAACCTTGAATTCGAAGGGTGTGGCTGTTGATTTGCTTGCGCTGGGTCGAATGGAGGATCCTTTTGGGGAGGAACTGCGCAGGAGGACTGTGGGGTTGAAAACGGAAGACCAGATTCTAGGGTTTCTTTCAGGTGTGGAGGGCCAATGGGGAAGCAGGAGGAAGAGGAGGCGGTTTGTGGCTGCTTCGCTGTTTGGGGACGTGCTTCCAAGGTCTTGGAAGCTCCTGCTGGGACTCAAAAGGAAGGAGGGCGTTGCGTGGTTAGATTGCCGGAGATACGTTAGTCCAAATGGGCACCAATTCGTGTCTTGCCAAGAGGTTTCTTCATACATTCTGTCTCTGCAAGGTGCAATGCTGCCAGTATCGGATAGAGATGATTATAATAACGCTCAATTTGACAAAGTGGCTCCTGAATCTGATGCAGGTCGAATCCATCAAGGTTCCATCTCCAATGGAAGCTCTAGTTTCTCGTCACCCACAACTGTCTCTAATGTTTCTGGTAACCGACAGAAGCAACAAGAAACCCCTTGTTGCTATAATGCTACACCTATCTCTTATATTTCTTGTGAAAATGGGAAAAAGGTTGAGTTCTCCCACCAAAGGAGACCTAAGAGACGCAGGCCTGGTAAAGCAATTGTTGATGGTGTTATAATAAAAGATGGAAAGTTTGAATGCCAGTTCTGCCATAAAATTTTTACTGAGAGACACCGTTATACTGGCCATATTGGGGCTCATGTAAGATACCAAGGCATAACTGCAGATGTACTGGCGGATGAAAATAAAGCTAAAAGGTTCTCATGTGATAATGATTTCCCCACTATTCAAAATGATGTTTGTCTTACTGTTCAATATGCTATGAAGCTAAACGGTCCTCTAGCCATGGGAGGTCAATATGAAATTCCCACTCCCAAATCTGCTGATGGCGGTCATTTGGAAGGGGTTATTGAGAAAGAGACTGCAATAGAGATTAAATGCATTGATAATTCAGATTGTGCATTTCCTTCTGCTAATGATTTGAATGATACTCCTCAAGCATGCTCTCCCATTGTAATTAAAGAAGTATCGCCCAACAAATCTGTTGACTGTGAGGCCAATGATGGTGCCATTATTAGCTATAGTGATAACGGTAATCTTGATGAAAAAGGCTTTGAAGAAGCAATGCCTAGCACATCCGTAGATGCCGTGCCTTTATTCGATGCTCAGAAAGTACTGGATACAACTGCACCTTCTTCCTCCGTTTCCAAGTCTTTCAACACATCCCCAGTTCCATCTGACGGTGCTGATGCTCCTAGCAAAATGAATAATGTAGATATACCTTCTGTTACTAGTAAGCCCCAAGATGTAGGATCTCCAATTCAAGCAAATTTGAATGGTACAGCTTGTAATTTTGATGAGGATCTTAATTGTATTTCCATGAAAAGAACTTTTGATAATGCATCTGTTGATTTTGAGGTCAATGATGGTGCCATTGTTAGCTATAGTGATAACGGTACTCTTGATGAAAAAATCTTTGAAGAAACAAAACCTAGCGCATCCACTGAAACTGTGCCTTTATTCTCCACCCACATTCATATTAAAGCTCAGAAAGCACCAGATACAACTGCGCTTTCTTCCTCCATTTCCAGATCTTTCAGCATATCCCCAGTTCCATCTGAAGGTGGTGATGTTCTTAACAAATTGAATAATGAAGTGGATATACCTTCTGCTACTAGTAAGCCCCAAGATACAGGATCTCCAATTCAAGCAAATTTGAATGGTACAACTTGTAATTTTGACGAGGATCTTAATTGTATTTCTATGAATAGAACTTTTGATGATGCATCTTTGGTTGCATCGGATGCTGATAATGTTACCTGTGAAGCCATTAATGACAATGATCTCCCTTTTTCCCCAAGTAAAGCTGATGTGCTTGAGAAAAATGACTACACTTCAACCAATTATGTGTCTCATAATGCTGTATGTACTAGCGACTTTATGGACGTAGATGCCAATTCCTGCTATGATTTATCATTGTCTTTAATGGATATGGATGTGAAACCCAAAGATAAGCATAGTGGAATAAATCTTTCCAGCAATTTGAGTTCTGAATTTGAGAAATATAATGATAAAATCATAGAGGAAATTGAGAATCATTCATTCTCCCTGTCAGGAAATCAGCCTAGCAATGGATGTGTGTTGTATGCAGAAGATGTTTCCAGTCGTGCTGTTGAAGAACATGTTGAAAAGCCCAAATTTAGAGAAGGGCGAGATTGTAGTGAATATTTTCAGCAGCTTTTTGACAAAGATTCTGTTTTAACAGTTGGCGTGCCTTGTACTCTTCAGAACAGCTCTACTTTAATCTCTTTCGGTAGCGAACGGACACTGACTATTGGAGGAAATACAGATTGTCCTTTTGTTGCTGACATAAATGAATCTGTTCTCGAAGAAATTGGTAAACCTATCAATGAACTGGAATTTTTTTTCGGCAGGAACAATTCTGTGCATGAAGAGAATACTACCGATGAGATTATGGAAAATGATGCAGAAAGTAAAGCTGTTCATATCAGTTTGTCCAATTCATCTTGGTTACAAGAGACCAATGTTCTTCCTGTTCTTGAAATGCTACCTGATCAGTGCGGGGGCGAAATGGGCGGGCAGAAGAGCAACGGGAGCTTGCAGGCGTTTGAGGAACTGAGATTGGGCGGCATCGAGCCGTCCGATTTTGCCCTCTTCACAGGGCATGATTCCCGAAGCCCAGCAGAGGAGCCATCCATATCATTGGGGTACGAGCAGCAACAACAGGAACAACAACAGCAACATCATTGTTCCTCCTTTGACCTCAGCTGGAACATATCCTTATCTGCTGGCAGCTTCGCATGCGCGTGCGTGTGCGTGTGGTGCAACTCCGAGTTCAGGCATGACCACGGAATTAATGCCGAACCTAACTCTGAAACCATCTCCTTCATTTGTCCCTCTTGCAAGGCTAAATTCTCTGCCCCTTGAATGCCAAGAAAGCCTCGAAGCCTCTTACTGACTCTCTCTCTCTCTCTCT

Network for GWHGAAEX013499

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX013499
MVTDLIPVVDLRFLSQTELAALALSSSNAFDLRRCDDVVVPKIDRSVFNESAGSRKQTYSRFRLASPKPDSPSLPSSLSRRRGRPRSIPLPNSDRPASDDPKSDPDRRENVLIASFLRQLFSPEDPSSQNPPPLSNPVSTSVCADEKNDGWKSILAAAEEAQKALVIEEDRDRDRETLNSKGVAVDLLALGRMEDPFGEELRRRTVGLKTEDQILGFLSGVEGQWGSRRKRRRFVAASLFGDVLPRSWKLLLGLKRKEGVAWLDCRRYVSPNGHQFVSCQEVSSYILSLQGAMLPVSDRDDYNNAQFDKVAPESDAGRIHQGSISNGSSSFSSPTTVSNVSGNRQKQQETPCCYNATPISYISCENGKKVEFSHQRRPKRRRPGKAIVDGVIIKDGKFECQFCHKIFTERHRYTGHIGAHVRYQGITADVLADENKAKRFSCDNDFPTIQNDVCLTVQYAMKLNGPLAMGGQYEIPTPKSADGGHLEGVIEKETAIEIKCIDNSDCAFPSANDLNDTPQACSPIVIKEVSPNKSVDCEANDGAIISYSDNGNLDEKGFEEAMPSTSVDAVPLFDAQKVLDTTAPSSSVSKSFNTSPVPSDGADAPSKMNNVDIPSVTSKPQDVGSPIQANLNGTACNFDEDLNCISMKRTFDNASVDFEVNDGAIVSYSDNGTLDEKIFEETKPSASTETVPLFSTHIHIKAQKAPDTTALSSSISRSFSISPVPSEGGDVLNKLNNEVDIPSATSKPQDTGSPIQANLNGTTCNFDEDLNCISMNRTFDDASLVASDADNVTCEAINDNDLPFSPSKADVLEKNDYTSTNYVSHNAVCTSDFMDVDANSCYDLSLSLMDMDVKPKDKHSGINLSSNLSSEFEKYNDKIIEEIENHSFSLSGNQPSNGCVLYAEDVSSRAVEEHVEKPKFREGRDCSEYFQQLFDKDSVLTVGVPCTLQNSSTLISFGSERTLTIGGNTDCPFVADINESVLEEIGKPINELEFFFGRNNSVHEENTTDEIMENDAESKAVHISLSNSSWLQETNVLPVLEMLPDQCGGEMGGQKSNGSLQAFEELRLGGIEPSDFALFTGHDSRSPAEEPSISLGYEQQQQEQQQQHHCSSFDLSWNISLSAGSFACACVCVWCNSEFRHDHGINAEPNSETISFICPSCKAKFSAP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.640
SRP064423	SRR2545915	Juvenile tuber	21.390
SRP108465	SRR5643513	five period of Gastrodia elata	14.700
	SRR5643514	five period of Gastrodia elata	14.720
	SRR5643515	five period of Gastrodia elata	15.240
	SRR5643524	five period of Gastrodia elata	14.480
	SRR5643525	five period of Gastrodia elata	13.890
	SRR5643528	five period of Gastrodia elata	11.420
	SRR5643658	five period of Gastrodia elata	20.000
	SRR5643659	five period of Gastrodia elata	14.180
	SRR5643660	five period of Gastrodia elata	13.250
	SRR5643661	five period of Gastrodia elata	11.810
	SRR5643662	five period of Gastrodia elata	13.130
	SRR5643663	five period of Gastrodia elata	16.830
	SRR5643664	five period of Gastrodia elata	15.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.950
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.300
SRP279888	Gastro	Gastrodia elata tuber	11.86
	Juven	Juvenile tuber	19.05
	Mother_Gastro	Mother tuber of Gastrodia elata	22.52
	Mother_Juven	Mother tuber of Juvenile	23.32