Detail information of GWHGAAEX013501/evm.TU.scaffold_50.113
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743774670|ref|XP_010917697.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like [Elaeis guineensis] |
| Swissprot | tr|Q9C866|PPR65_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g31430 |
| trEMBL | tr|F6HH61|F6HH61_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB51557.1} |
| TAIR | AT1G31430 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 2351718 | 2367208 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013501
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 92 | 139 | 1.00E-08 |
| PF13041.5 | PPR_2 | 194 | 240 | 8.20E-12 |
| PF01535.19 | PPR | 268 | 294 | 0.0032 |
| PF01535.19 | PPR | 296 | 319 | 2.60E-06 |
| PF13041.5 | PPR_2 | 325 | 369 | 2.80E-10 |
| PF01535.19 | PPR | 400 | 425 | 0.0025 |
| PF13041.5 | PPR_2 | 426 | 474 | 1.90E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.730 |
| SRR2545915 | Juvenile tuber | 1.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.600 |
| SRR5643514 | five period of Gastrodia elata | 1.730 | |
| SRR5643515 | five period of Gastrodia elata | 1.590 | |
| SRR5643524 | five period of Gastrodia elata | 1.690 | |
| SRR5643525 | five period of Gastrodia elata | 0.780 | |
| SRR5643528 | five period of Gastrodia elata | 0.530 | |
| SRR5643658 | five period of Gastrodia elata | 0.300 | |
| SRR5643659 | five period of Gastrodia elata | 1.820 | |
| SRR5643660 | five period of Gastrodia elata | 1.190 | |
| SRR5643661 | five period of Gastrodia elata | 1.250 | |
| SRR5643662 | five period of Gastrodia elata | 1.280 | |
| SRR5643663 | five period of Gastrodia elata | 1.140 | |
| SRR5643664 | five period of Gastrodia elata | 1.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.560 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.16 |
| Juven | Juvenile tuber | 0.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.63 | |
| Mother_Juven | Mother tuber of Juvenile | 0.43 |