Gene detail

Detail information of GWHGAAEX013502/evm.TU.scaffold_50.115

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1947	1.00E-100	Leucine rich repeat proteins, some proteins contain F-box
nr	gi\|743840938\|ref\|XP_010937399.1\|	4.34E-150	PREDICTED: F-box protein FBW2-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9ZPE4\|FBW2_ARATH	4.00E-101	F-box protein FBW2
trEMBL	tr\|M0U0E6\|M0U0E6_MUSAM	5.00E-144	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P14880_001}
TAIR	AT4G08980	1.00E-100	F-BOX WITH WD-40 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	2424532	2426394	+

Transcript Sequence
>GWHTAAEX013502 CCCCCCCTGCTTTTCCTCTCATTTGTTGGGTTTGGTGACTTCCCTCGTCTTCCTCAGGCCCTCGCTACTTTCCTCTTATTGAGCTCTAGAGAAGTCGAATCTCTTCCTCCGCGGTCCCATTAACATCTCTGCTTTCCTCCGTTCCCCAAAGGTGCCGCCTTTCCTTCTGCAGCAACCAGATCTGGGTCCCCTCTGAGCTTCCTTGGAGTAAAACCCTAAAGTGTCGTCCCCAAAATCCGAGTTTCCATGGGGGAAGAGGATTGCGGTGAAAGCCCGGCTTGGGACGAGCTTATTCCGGATGCCCTGGGTCTGATATTCCGGAACCTGTCTCTCCAGGAGATCCTCTGCGTGGTGCCTAGGGTTTGCAAATCCTGGAATCGCGCTGCGTGCGGCCCCTACTGCTGGCAAGAGATCGATCTGGAGGAATGGAGCCGGCGCGTCCATCCAGATCAGATCGAACGGATGGTCCGCCTCCTCCTCCGCCGCAGCTCCGGCTCTTGCCGGCGCCTCTCCGTCTCATGCATCCCCAACGATTCCCTCCTCTCCTTCATCGCCGATCATGCGGGGGCGCTGCAATCCCTGGAGATGCCGAGGAGCGACGTGAGCGATGCGGCAGTGGAGCAGCTTGCGGGGAGGCTTTCCAGCATCACGTTCTTGGATGTGAGCTCCTGCAAGAGGATGGGGGCGCGGGCGCTGAGGTCCTTTGGGTTGAACTGCAAGTCCCTTGCCGGGCTGCGGCGAACGATGCACCCTCTGGAGGTTGCGGGGAAGGAGTGGCAGGACGAAGAGGCGGCCGCCATTTCCCTCTCCATGCCCAAGCTCCGGCACCTGGAGATGGCTTACCTCCCCGTCACTACGCAGGCGGTGCTTCAGATCCTCTCCCGTTGCCGCGACCTCCAGTTCCTCGACATCAGGGGCTGCTGGGATGTCAAACTCGACGAAAAGATGCTCAAGGAGAGGTATGCCTCGCTCGCCGTCCTGGGCCCCCACATTGTCGATTCCTACGAGCGCAGCTTCTGGAACGATTGCTCTGATTACTCCGACACCTCTGAGTATTCCTGGGAGTTCATGGATGATGTGGATGATGTCTATGTTGCAATGACTGATCAGGGCACTCCTTGGGATGATGATGATGATGATGATGATGATGATGATGTTGCTGATGTTGATATTGTTGAGCAGAATGTGGAGAGGCTGCAGGTTAGGTTCTATGGAGGCGGATTCAATGAAGCTTTTGCTGGCTTCGAATGGCCTATTTCTCCTTAGCATATATACCAAAATGTTAGCTTTGGAATGTTGGTAGAGAGAAACAGAGATTTCTGTATGTAAACTTTGCGTTTGCACTTTGGAAAATGTATCATTTTTTTTTTTTTTGACTTTTTTTTATAGTGTTGGTAGAGAGAAACGGAGATTTGCTCTTCGGTGTGATTAGGGCTCGGATCCCTCTAATCCATAAATGAAAAGATGCAATCTTTTTGATGAATGAATTCTGATCGCTTTAGGAAACAATGAGGTATAATGACTGTATCATCAACGGAATGGACCATCTGATGAAATCTCTTACAAAAGGCAAAATATTGTGAATTTGACTTCATGATGATGATGAATAGAAGGTTTTTCATCAGCAGATCTGCTTTTGTGAAGCAGACAGAAAAGGAGGATTATTTAAATGAAGGAAAATATTATCCTCAACTCCATGAAATGGAGAAGGCCTTCTGAATGAATATGAGAAATTATCTATTTATATATACAGGTATGTATGTATTGGAATCTTATTGTTTTTGAA

Network for GWHGAAEX013502

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.6	F-box-like	20	58	1.10E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.900
SRP064423	SRR2545915	Juvenile tuber	15.530
SRP108465	SRR5643513	five period of Gastrodia elata	48.850
	SRR5643514	five period of Gastrodia elata	44.960
	SRR5643515	five period of Gastrodia elata	35.660
	SRR5643524	five period of Gastrodia elata	42.890
	SRR5643525	five period of Gastrodia elata	36.960
	SRR5643528	five period of Gastrodia elata	22.090
	SRR5643658	five period of Gastrodia elata	23.500
	SRR5643659	five period of Gastrodia elata	30.530
	SRR5643660	five period of Gastrodia elata	37.210
	SRR5643661	five period of Gastrodia elata	36.490
	SRR5643662	five period of Gastrodia elata	37.820
	SRR5643663	five period of Gastrodia elata	37.190
	SRR5643664	five period of Gastrodia elata	35.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	64.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	64.940
SRP279888	Gastro	Gastrodia elata tuber	23.42
	Juven	Juvenile tuber	26.44
	Mother_Gastro	Mother tuber of Gastrodia elata	35.89
	Mother_Juven	Mother tuber of Juvenile	29.87