Detail information of GWHGAAEX013508/evm.TU.scaffold_50.123
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-142 | FOG: PPR repeat |
| nr | gi|743849698|ref|XP_010939694.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Elaeis guineensis] |
| Swissprot | tr|Q9SY02|PP301_ARATH | 3.00E-143 | Pentatricopeptide repeat-containing protein At4g02750 |
| trEMBL | tr|M0SCC6|M0SCC6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P06590_001} |
| TAIR | AT4G02750 | 1.00E-142 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 2583864 | 2586734 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013508
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 60 | 90 | 9.70E-06 |
| PF01535.19 | PPR | 91 | 121 | 5.40E-06 |
| PF01535.19 | PPR | 123 | 152 | 7.10E-08 |
| PF01535.19 | PPR | 153 | 181 | 2.50E-05 |
| PF13041.5 | PPR_2 | 182 | 214 | 1.30E-07 |
| PF01535.19 | PPR | 215 | 238 | 0.00078 |
| PF13041.5 | PPR_2 | 245 | 293 | 1.10E-07 |
| PF13041.5 | PPR_2 | 347 | 393 | 5.80E-10 |
| PF01535.19 | PPR | 422 | 445 | 0.69 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.030 |
| SRR2545915 | Juvenile tuber | 2.140 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.600 |
| SRR5643514 | five period of Gastrodia elata | 3.630 | |
| SRR5643515 | five period of Gastrodia elata | 4.440 | |
| SRR5643524 | five period of Gastrodia elata | 4.420 | |
| SRR5643525 | five period of Gastrodia elata | 1.260 | |
| SRR5643528 | five period of Gastrodia elata | 0.610 | |
| SRR5643658 | five period of Gastrodia elata | 0.180 | |
| SRR5643659 | five period of Gastrodia elata | 6.530 | |
| SRR5643660 | five period of Gastrodia elata | 5.240 | |
| SRR5643661 | five period of Gastrodia elata | 6.610 | |
| SRR5643662 | five period of Gastrodia elata | 5.360 | |
| SRR5643663 | five period of Gastrodia elata | 4.710 | |
| SRR5643664 | five period of Gastrodia elata | 4.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.470 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.81 |
| Juven | Juvenile tuber | 3.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.04 | |
| Mother_Juven | Mother tuber of Juvenile | 1.02 |