Detail information of GWHGAAEX013511/evm.TU.scaffold_50.126
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 3.00E-52 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|743859171|ref|XP_010942613.1| | 1.92E-56 | PREDICTED: homeobox-leucine zipper protein HOX20-like [Elaeis guineensis] |
| Swissprot | tr|Q940J1|ATB16_ARATH | 9.00E-53 | Homeobox-leucine zipper protein ATHB-16 |
| trEMBL | tr|D6MK31|D6MK31_9ASPA | 8.00E-55 | Transcription factor {ECO:0000313|EMBL:ADG57878.1} (Fragment) |
| TAIR | AT4G40060 | 3.00E-52 | homeobox protein 16 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 2602198 | 2605066 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013511
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 45 | 97 | 8.80E-18 |
| PF02183.17 | HALZ | 99 | 140 | 4.70E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-HD-ZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 535.700 |
| SRR2545915 | Juvenile tuber | 337.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 449.580 |
| SRR5643514 | five period of Gastrodia elata | 375.710 | |
| SRR5643515 | five period of Gastrodia elata | 397.320 | |
| SRR5643524 | five period of Gastrodia elata | 461.760 | |
| SRR5643525 | five period of Gastrodia elata | 621.550 | |
| SRR5643528 | five period of Gastrodia elata | 495.110 | |
| SRR5643658 | five period of Gastrodia elata | 489.490 | |
| SRR5643659 | five period of Gastrodia elata | 654.660 | |
| SRR5643660 | five period of Gastrodia elata | 687.030 | |
| SRR5643661 | five period of Gastrodia elata | 787.220 | |
| SRR5643662 | five period of Gastrodia elata | 591.580 | |
| SRR5643663 | five period of Gastrodia elata | 541.580 | |
| SRR5643664 | five period of Gastrodia elata | 818.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 518.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 541.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 317.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 709.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 750.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 959.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 553.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 544.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 259.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 333.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 318.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 318.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 726.25 |
| Juven | Juvenile tuber | 1,156.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 705.71 | |
| Mother_Juven | Mother tuber of Juvenile | 757.89 |