Detail information of GWHGAAEX013513/evm.TU.scaffold_50.127
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374287275|ref|YP_005034360.1| | 6.00E-148 | putative membrane transport protein [Bacteriovorax marinus SJ] |
| nr | gi|695067907|ref|XP_009380879.1| | 0 | PREDICTED: dicarboxylate transporter 2.1, chloroplastic-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FMF7|DIT21_ARATH | 0 | Dicarboxylate transporter 2.1, chloroplastic (Precursor) |
| trEMBL | tr|Q768R4|Q768R4_MAIZE | 0 | Plastidic general dicarboxylate transporter {ECO:0000313|EMBL:BAD06220.1} |
| TAIR | AT5G64290 | 0 | dicarboxylate transport 2.1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 2626125 | 2648812 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013513
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00939.18 | Na_sulph_symp | 84 | 548 | 9.40E-126 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.670 |
| SRR2545915 | Juvenile tuber | 2.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.280 |
| SRR5643514 | five period of Gastrodia elata | 6.280 | |
| SRR5643515 | five period of Gastrodia elata | 5.380 | |
| SRR5643524 | five period of Gastrodia elata | 6.310 | |
| SRR5643525 | five period of Gastrodia elata | 4.720 | |
| SRR5643528 | five period of Gastrodia elata | 5.210 | |
| SRR5643658 | five period of Gastrodia elata | 3.760 | |
| SRR5643659 | five period of Gastrodia elata | 2.760 | |
| SRR5643660 | five period of Gastrodia elata | 3.290 | |
| SRR5643661 | five period of Gastrodia elata | 3.430 | |
| SRR5643662 | five period of Gastrodia elata | 2.460 | |
| SRR5643663 | five period of Gastrodia elata | 2.520 | |
| SRR5643664 | five period of Gastrodia elata | 1.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.94 |
| Juven | Juvenile tuber | 2.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.20 | |
| Mother_Juven | Mother tuber of Juvenile | 2.70 |