Detail information of GWHGAAEX013516/evm.TU.scaffold_50.133


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08007.00E-69FOG: Predicted E3 ubiquitin ligase
nrgi|573956998|ref|XP_006660721.1|2.70E-78PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Oryza brachyantha]
Swissprottr|Q8RXX9|ATL6_ARATH2.00E-69E3 ubiquitin-protein ligase ATL6 (Precursor)
trEMBLtr|M0SCD5|M0SCD5_MUSAM3.00E-79Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P06680_001}
TAIRAT3G052007.00E-69RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005326741832676001+
Transcript Sequence

Network for GWHGAAEX013516

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21261694.50E-15
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.450
SRR2545915Juvenile tuber10.580
SRP108465SRR5643513five period of Gastrodia elata22.280
SRR5643514five period of Gastrodia elata23.500
SRR5643515five period of Gastrodia elata20.570
SRR5643524five period of Gastrodia elata17.880
SRR5643525five period of Gastrodia elata13.110
SRR5643528five period of Gastrodia elata10.170
SRR5643658five period of Gastrodia elata11.560
SRR5643659five period of Gastrodia elata24.410
SRR5643660five period of Gastrodia elata18.820
SRR5643661five period of Gastrodia elata24.230
SRR5643662five period of Gastrodia elata21.720
SRR5643663five period of Gastrodia elata17.670
SRR5643664five period of Gastrodia elata25.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.150
SRR6049655Rhizomagastrodiae_C368-T10_good_130.530
SRR6049656Rhizomagastrodiae_C368-T07_good_125.480
SRR6049657Rhizomagastrodiae_C368-T07_good_117.710
SRR6049658Rhizomagastrodiae_C368-T04_good_119.780
SRR6049659Rhizomagastrodiae_C368-T04_good_117.400
SRR6049660Rhizomagastrodiae_C368-T01_good_116.870
SRR6049661Rhizomagastrodiae_C368-T04_good_115.710
SRR6049662Rhizomagastrodiae_C368-T01_good_122.510
SRR6049663Rhizomagastrodiae_C368-T01_good_119.540
SRR6049664Rhizomagastrodiae_C368-T10_good_140.410
SRR6049665Rhizomagastrodiae_C368-T10_good_140.410
SRP279888GastroGastrodia elata tuber 9.37
JuvenJuvenile tuber11.35
Mother_GastroMother tuber of Gastrodia elata 29.65
Mother_JuvenMother tuber of Juvenile 8.01