Detail information of GWHGAAEX013523/evm.TU.scaffold_50.140


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG00143.00E-36MADS box transcription factor
nrgi|595649778|gb|AHM92094.1|3.37E-73MADS-box protein 18 [Erycina pusilla]
Swissprottr|Q9XJ66|MAD22_ORYSJ2.00E-49MADS-box transcription factor 22
trEMBLtr|X2F5E4|X2F5E4_9ASPA1.00E-73MADS-box protein 18 {ECO:0000313|EMBL:AHM92094.1}
TAIRAT4G245403.00E-36AGAMOUS-like 24

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005328621392865382-
Transcript Sequence

Network for GWHGAAEX013523

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01486.16K-box331101.50E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.600
SRR2545915Juvenile tuber0.530
SRP108465SRR5643513five period of Gastrodia elata57.300
SRR5643514five period of Gastrodia elata87.030
SRR5643515five period of Gastrodia elata46.860
SRR5643524five period of Gastrodia elata67.200
SRR5643525five period of Gastrodia elata0.540
SRR5643528five period of Gastrodia elata0.700
SRR5643658five period of Gastrodia elata0.130
SRR5643659five period of Gastrodia elata0.700
SRR5643660five period of Gastrodia elata0.620
SRR5643661five period of Gastrodia elata1.090
SRR5643662five period of Gastrodia elata1.250
SRR5643663five period of Gastrodia elata1.650
SRR5643664five period of Gastrodia elata0.290
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_184.060
SRR6049655Rhizomagastrodiae_C368-T10_good_1183.560
SRR6049656Rhizomagastrodiae_C368-T07_good_1116.010
SRR6049657Rhizomagastrodiae_C368-T07_good_145.540
SRR6049658Rhizomagastrodiae_C368-T04_good_1100.990
SRR6049659Rhizomagastrodiae_C368-T04_good_1103.860
SRR6049660Rhizomagastrodiae_C368-T01_good_158.140
SRR6049661Rhizomagastrodiae_C368-T04_good_149.290
SRR6049662Rhizomagastrodiae_C368-T01_good_1124.840
SRR6049663Rhizomagastrodiae_C368-T01_good_1175.810
SRR6049664Rhizomagastrodiae_C368-T10_good_1195.020
SRR6049665Rhizomagastrodiae_C368-T10_good_1195.020
SRP279888GastroGastrodia elata tuber 0.38
JuvenJuvenile tuber26.63
Mother_GastroMother tuber of Gastrodia elata 25.30
Mother_JuvenMother tuber of Juvenile 11.20