Gene detail

Detail information of GWHGAAEX013524/evm.TU.scaffold_50.141

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|557694525\|ref\|YP_008797579.1\|	DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum subterraneum]
KOG	KOG0261	RNA polymerase III, large subunit
nr	gi\|743877224\|ref\|XP_010907843.1\|	PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Elaeis guineensis]
Swissprot	tr\|P18616\|NRPB1_ARATH	DNA-directed RNA polymerase II subunit 1
trEMBL	tr\|J3LZ58\|J3LZ58_ORYBR	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU004279}
TAIR	AT5G60040	nuclear RNA polymerase C1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	2868526	2977215	-

Transcript Sequence
>GWHTAAEX013524 CAGTTCCCTCGTAAATAGTTTTTGGTCGGATCGACTATTAGAGCTGCTCTCTTAGTTGCAGTTGGGTGAGAGGGTTTTCTGTGTTCCTTCGACTCTATCGCTTGGTTGAGCTCTCTCTCTAGGGCTTCCGGCTACGTCGACATGAAGCAGGGTGCCGAAAAGCTGAGATGTACAAAGGAACCATACATAGAGGTCAGCGGCCACCAGAGGATTAAAAACATACGTTTCAGTATACATTCCGGAGATGACATAAGAAAACAAGCAGAGGTTCAGGTTTGGAAAAACAGCATTTACGATTTAAATGTGAAGCCAGTTCCAGATGGATTGCTTGATCTTAGAATGGGTCCTCCAAATCGAAATTTTACTTGTGCTACATGTCATGGAACTTTCACTGAGTGTCCTGGACACTTTGGATGTTTGAAACTTACGCTTCCAGTTTTTAATGTTGGCTATTTTAGTTGTATATTGAACATTCTGAAGTGCATCTGTAAGGCTTGTGGTAGAATTCTTTTACCGGATAAAGAGCGGAGATTTTTCTTGAAGGCAATGCGCAAGCCTAGAGCAGATCCATCTCATAAAGATCATTTACTGAAGAAAATTAGAGACAAATGTGGCGCTCAATGTTTTTATTGCCTCCACAAAAATGGTGTGGTGAAAAAATTAGGTTCTTCGCTTACTGTTGTTGAAGATTTTACAAGAAAGATTGATGGAAGTGCAGATGAGTTACGTTCTGCATTATCCTACATAAAAGACAGGGCTGTCCAACCAATTCATGTCCTTCGCCCTGTTAAAGTTCTGTCCCTTTTCAAAAGAATGCTTGATGAGGACTGTGAATTACTTAATCTAAATGATAGGCCAGAGAAGCTTATTATCACTGATATTGCCGTGCCACCATCTCCCATCAGGCCTTCTGTTCTAATGGACTCAGGAATGAGCAATGAAAATGACATTACCACCATCCTTAAGAGTATAGTCAACACAAATTCAATTCTCAGAGAGGATCTTGAAGGTGCAGCTCCCCTCTTTAAGTGTTTGGAGTGCTGGGATCTCCTTCAAGTTCAAGTGGCTGAGTATATTAATAGTGAAGCTCCTAGCGTTCCTGATAACAAAAATCGTGGTCTCATCCAAAGACTGAAGGGTAAACAAGGGAGATTCCGTGGTAACTTGTCTGGAAAGCGTGTTGAATTTACCGGGCGCACTGTTATTTCTCCAGATCCAAATTTAAAAATCACTGAGGTTGCTATTCCAACTTTAATGGCTCAGATATTGACGTATCCTGAGAGAGTTTCTTGTCACAACATAGAGAAATTAAGACTGTGTGTTCGTAATGGAAGATCTAAGTACCCAGGAGCTAATTTTGTTACATTGTCGAGTGGATCAACAATGGATTTGAAGTTTGGTGGGAGGAAAAATATTGCTAATGATCTGAAATATGGTGATATAGTTCAAAGGCATTTGGAAGATGGCGATGTTGTTCTTTTTAACAGACAACCAAGTTTACATCGCATGTCTCTCATGTGCCACAGGGCAAGAATCATGCCGTGGAAAACACTTAGATTTAATGAATCTGTTTGCAATCCATATAATGCTGATTTTGATGGTGATGAGATGAATTTGCATGTTCCTCAAACAGAAGAAGCTCGCACTGAAGCTCTTATGCTCATGGGGGTGCAAAATAATTTGTGCACACCTAAGAATGGTGAAATTTTGGTTGCTTCTACACAAGACTTTTTGACTTCTTCCTTTTTGATTACAAGAAAGGACACCTTCTATGATCGAGCAAGCTTTGCGCTTATGTGCTCATACATGGGTGATGGGATGGAATCTATTGATTTGCCTGCTCCTGCCTTGATAAAGCCCGTTGAACTTTGGACCGGGAAACAGTTATTTAACATGGTGGTGCGCCCAAATGCAAGAACTAGAGTTTTTATAAATTTAACTTTGAAAGAGAAAGGCTTCAGCAAACCTCAAAATTTATCTGAAACCATGTGTCCACGTGATGGTTTTGTTTATTTCAGGAACAGCGAACTTATAAGTGGGCAACTGGGGAAGGCTACTTTAGGAAATGGGAGCAAGGATGGACTGTTTTCAGTTCTATTGAGGGACTACAATGCATATGCTGCTGCGAGTTGCATGAACAGATTGGCCAAATTAAGTGCTAGGTGGATTGGGAACCATGGATTTTCTATTGGCATTGATGATGTACAACCAGGAGAGCGTCTCAATCAGCAAAAAAAGAAAACAATTGATGATGGAAATCGAGAGTGCCGAGAGTTCATAACCAAATATAACAAAGGAGATCTTACTTTGCAGACTGGTTGTGATGCAGCTCAAACTTTGGAGCTGGAAATTTATAACGTATTGAATAAAATTCGATCAGCTGCAGGAAATGTTTGTATGGATGAACTTCATTGGAGGAACAGTCCTTTAATCATGTCACAATGCGGATCTAAGGGTTCACCAATAAATATTAGCCAGATGATTGCTCTTGTGGGGCAACAGTCTGTTGGTGGTCGTAGAGCTCCAAATGGATTTATAGATCGAACACTTCCACATTTCCCAATCAATTCAAAGACACCTTCTGCAAAAGGTTTTGTGGCCAATTCATTTTACACAGGCTTGACGGCTACAGAGTTTTTCTTTCACACTATGGCTGGACGAGAAGGCCTTGTAGATACTGCTGTTAAGACAGCAGAAACTGGATACATGTCCCGTAGATTGGTTAAGGGCATGGAAGATGTTTCACTTCACTATGATCTTACCGTGAGGGATGCTAGTGGGGGTATAGTTCAGCTCCTTTATGGAGATGATGGCCTGGATCCCGCAAAGATGGAGGGAAAAGAAGGGAATCCATTAAATTTTGATCAGTTGTACATGAAAGTCATGGCTACATGTCCTCATAGTGATGATGATATTTTGTCACCAGCAGAGATAGTGCAAGCCGTGGATAAAAGGCTCTCACGGTCTGATATTGTTCAAGAGGGCGGCTGCTCTTCCGAGTTCAAGCAGCAGTTGTCAGATTTTATTCATAAGTGTATTGCTACACTTAGAAAAACTAGGCACGCATTGCAGCTTGATGAAAATTCTGACAAGAATAAGGGTTGTAGTAAAACTGAGAGTGTTGCTGCTCGGATATCTGGAATTTCTACTAGGCAGTTAGAGGTATTTCTTGACACATGCATTTCTCGTTATTATTTAAAAAAGCTAGAGGCAGGAGCAGCAATTGGGGTCATTGGAGCTCAAAGTATAGGAGAGCCAGGGACACAAATGACACTCAAAACTTTCCACTTTGCAGGAGTTGCAAGCATGAATATCACTCTTGGTGTGCCTCGAATCAAGGAAATTATAAATGCTGCCAAGAATATCAGTACACCAGTGATTAAAACTCAACTTCTTTCAAGCAGTGAGGCTCTAACAGCGAGAATTGTTAAGGGTTGCCTTGAAAAAACTGCACTGGGTGAGGTTTCCAAATGCATAAAGATTGTGCTGAAAGCTAGTCAGTCATATATATCTGTGGTGCTTGACATAGAGAGAATTGAAGGTTTGCAGATGAGGATCTCTTCTGAAACAGTTAGATATTCAATTTTGAATCACCCTAGGATCGGTTTAAAACCTGAGCATGTCCGCACAGCGGGCTCTCAAAAGGTGAGAATATATCCTCCTAATGCTGACAAAAACAAAATTCAGGTTCAGCTGCACTCTTTGAAGAGGTTGCTTCCTAAGGTTATTGTGAAGGGTATTCCAACTGTGAAACGTGCGGTTATCAAGAATGATAAAGGATCGTACAGCTTATTTGTGGAAGGAACCAACTATCTTGCTGTTATGGGCACTCCGGGTGTCGATGCAAGCAAAACCACTAGCAATCATGTTATTGAAGTACGTCAAACTCTTGGTATTGAAGCTGCTAGGCAGACCATCATTAATGAAATTAAATTTACTATGGAAGGGCATGGAATGAGTATTGACATTCGCCATATGAAGCTCCTTGCTGATTTAATGACATACAAAGGTGAGGTGCTCGGTATGACGAGATTTGGACTCACAAAAATGAAAAGCAGTGTTTTGATGTTGGCATCATTCGAGAAAACATCCGAGCATTTATTCAATGGATCATACAGTGGTAGGGATGACCATATTGATGGTGTGAGTGAGTGCATCATAATGGGCATTCCCATGCAACTGGGCACTGGAATACTTAAAGTCAGACAAAGAGTTGATGATCTTCCTGAGCTGAAGCGTGGACCAGATCCAATTCTTAGCTGAGACAACCAGTATTTCGGGTTTTGTTTATTGGACTGCAATGTGTTGAAGGTCGCTCCATGATTTTTGATTTTTTGAGATGAAAAATAGATAGTGTTATTCAAGATACTGGTATTTGTCGTTTGTAGATGTACTTATGTATCAGATGGGTTTGTTCTTCCTTCCCAAGATTGCCGCAATCCTGAATTGTAAAATTACTTGAGCATGGGAGAACTGATGCTGTTAATAAAGTTTCTATATTTCTTTGAAGCTGGAAAAGTCGTTTTTGATGGTGCCATGATTTGAAATTTTCCCACAAACTTTTCACACTCGACAATATGTTACGCTTGGTTACAATATTCTGTCTTTTCTGTATCTTTCCACAGATCCTGCTTATGCTCCTCTATGTCAAGGCAGTGATTCCTAATTTGCTCTGAAGCTGCCTTGGGTTGAGGGATTGAGTCTGGAGTCTGTTTCCAGCCTTCTTGCAAGGCTTCAGAAAGTGAATTCATCCTCCCATTTTTTAGGATTTTTTTTTTTTTTTTTTTTGCTGGAGGAATCCTGCAATCCTTATAAATGAAAAAGACCATTTCTTTCTTCTACAGTTTTCTCAGTGCTGTACTATTCTACGCAGAAATTTTTCACTTTTCTTCTGCAATTCTCCCCATTGATAGGCGAATGGTTGTAAAGCAAAATTATCAATGGAAGTGAAGCTTTTCATGTTTGATTGTAGGATTCCTCATTGGAATGGTTATGTATATTCTGAATACTTGTGAAAAATATTTGAGAATCCTTGGGCTTAAACCTATTCGAGTAATTGGACCAAAGAAGTATGCAAAAGAAAGTTCTGATATGG

Network for GWHGAAEX013524

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04997.11	RNA_pol_Rpb1_1	22	342	5.20E-72
PF00623.19	RNA_pol_Rpb1_2	344	510	7.30E-72
PF04983.17	RNA_pol_Rpb1_3	513	688	3.00E-32
PF05000.16	RNA_pol_Rpb1_4	713	819	3.50E-28
PF04998.16	RNA_pol_Rpb1_5	826	1307	2.10E-85

Protein Sequence

>GWHPAAEX013524
MKQGAEKLRCTKEPYIEVSGHQRIKNIRFSIHSGDDIRKQAEVQVWKNSIYDLNVKPVPDGLLDLRMGPPNRNFTCATCHGTFTECPGHFGCLKLTLPVFNVGYFSCILNILKCICKACGRILLPDKERRFFLKAMRKPRADPSHKDHLLKKIRDKCGAQCFYCLHKNGVVKKLGSSLTVVEDFTRKIDGSADELRSALSYIKDRAVQPIHVLRPVKVLSLFKRMLDEDCELLNLNDRPEKLIITDIAVPPSPIRPSVLMDSGMSNENDITTILKSIVNTNSILREDLEGAAPLFKCLECWDLLQVQVAEYINSEAPSVPDNKNRGLIQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAIPTLMAQILTYPERVSCHNIEKLRLCVRNGRSKYPGANFVTLSSGSTMDLKFGGRKNIANDLKYGDIVQRHLEDGDVVLFNRQPSLHRMSLMCHRARIMPWKTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRASFALMCSYMGDGMESIDLPAPALIKPVELWTGKQLFNMVVRPNARTRVFINLTLKEKGFSKPQNLSETMCPRDGFVYFRNSELISGQLGKATLGNGSKDGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKKTIDDGNRECREFITKYNKGDLTLQTGCDAAQTLELEIYNVLNKIRSAAGNVCMDELHWRNSPLIMSQCGSKGSPINISQMIALVGQQSVGGRRAPNGFIDRTLPHFPINSKTPSAKGFVANSFYTGLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLVKGMEDVSLHYDLTVRDASGGIVQLLYGDDGLDPAKMEGKEGNPLNFDQLYMKVMATCPHSDDDILSPAEIVQAVDKRLSRSDIVQEGGCSSEFKQQLSDFIHKCIATLRKTRHALQLDENSDKNKGCSKTESVAARISGISTRQLEVFLDTCISRYYLKKLEAGAAIGVIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINAAKNISTPVIKTQLLSSSEALTARIVKGCLEKTALGEVSKCIKIVLKASQSYISVVLDIERIEGLQMRISSETVRYSILNHPRIGLKPEHVRTAGSQKVRIYPPNADKNKIQVQLHSLKRLLPKVIVKGIPTVKRAVIKNDKGSYSLFVEGTNYLAVMGTPGVDASKTTSNHVIEVRQTLGIEAARQTIINEIKFTMEGHGMSIDIRHMKLLADLMTYKGEVLGMTRFGLTKMKSSVLMLASFEKTSEHLFNGSYSGRDDHIDGVSECIIMGIPMQLGTGILKVRQRVDDLPELKRGPDPILS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03018	RPC1, POLR3A	RNA polymerase	map03020
K03018	RPC1, POLR3A	Cytosolic DNA-sensing pathway	map04623

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.030
SRP064423	SRR2545915	Juvenile tuber	10.490
SRP108465	SRR5643513	five period of Gastrodia elata	5.360
	SRR5643514	five period of Gastrodia elata	4.110
	SRR5643515	five period of Gastrodia elata	4.490
	SRR5643524	five period of Gastrodia elata	3.840
	SRR5643525	five period of Gastrodia elata	5.520
	SRR5643528	five period of Gastrodia elata	3.600
	SRR5643658	five period of Gastrodia elata	3.510
	SRR5643659	five period of Gastrodia elata	7.170
	SRR5643660	five period of Gastrodia elata	7.370
	SRR5643661	five period of Gastrodia elata	6.610
	SRR5643662	five period of Gastrodia elata	6.110
	SRR5643663	five period of Gastrodia elata	6.610
	SRR5643664	five period of Gastrodia elata	6.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.540
SRP279888	Gastro	Gastrodia elata tuber	7.64
	Juven	Juvenile tuber	6.83
	Mother_Gastro	Mother tuber of Gastrodia elata	4.90
	Mother_Juven	Mother tuber of Juvenile	7.21