Detail information of GWHGAAEX013528/evm.TU.scaffold_50.145


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG01507.00E-74Spliceosomal protein FBP21
nrgi|743877304|ref|XP_010907877.1|3.00E-112PREDICTED: WW domain-binding protein 4 isoform X1 [Elaeis guineensis]
trEMBLtr|Q69Y13|Q69Y13_ORYSJ1.00E-98cDNA clone:J013038O15, full insert sequence {ECO:0000313|EMBL:BAG89640.1}
TAIRAT1G495907.00E-74C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005330336653077358+
Transcript Sequence

Network for GWHGAAEX013528

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06220.11zf-U111435.50E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.690
SRR2545915Juvenile tuber9.610
SRP108465SRR5643513five period of Gastrodia elata10.980
SRR5643514five period of Gastrodia elata10.540
SRR5643515five period of Gastrodia elata11.680
SRR5643524five period of Gastrodia elata10.440
SRR5643525five period of Gastrodia elata12.470
SRR5643528five period of Gastrodia elata11.570
SRR5643658five period of Gastrodia elata9.610
SRR5643659five period of Gastrodia elata11.490
SRR5643660five period of Gastrodia elata10.090
SRR5643661five period of Gastrodia elata10.890
SRR5643662five period of Gastrodia elata10.860
SRR5643663five period of Gastrodia elata10.810
SRR5643664five period of Gastrodia elata10.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.590
SRR6049655Rhizomagastrodiae_C368-T10_good_16.960
SRR6049656Rhizomagastrodiae_C368-T07_good_17.060
SRR6049657Rhizomagastrodiae_C368-T07_good_18.060
SRR6049658Rhizomagastrodiae_C368-T04_good_19.290
SRR6049659Rhizomagastrodiae_C368-T04_good_18.570
SRR6049660Rhizomagastrodiae_C368-T01_good_16.770
SRR6049661Rhizomagastrodiae_C368-T04_good_17.970
SRR6049662Rhizomagastrodiae_C368-T01_good_17.180
SRR6049663Rhizomagastrodiae_C368-T01_good_18.160
SRR6049664Rhizomagastrodiae_C368-T10_good_17.930
SRR6049665Rhizomagastrodiae_C368-T10_good_17.930
SRP279888GastroGastrodia elata tuber 9.89
JuvenJuvenile tuber7.86
Mother_GastroMother tuber of Gastrodia elata 10.53
Mother_JuvenMother tuber of Juvenile 12.23