Detail information of GWHGAAEX013531/evm.TU.scaffold_50.150


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|147918983|ref|YP_687290.1|2.00E-93phenylalanyl-tRNA synthetase subunit alpha [Methanocella arvoryzae MRE50]
KOGKOG27840Phenylalanyl-tRNA synthetase, beta subunit
nrgi|672179777|ref|XP_008810062.1|0PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Phoenix dactylifera]
Swissprottr|Q9T034|SYFA_ARATH0Probable phenylalanine--tRNA ligase alpha subunit
trEMBLtr|K4BCN5|K4BCN5_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g090860.2.1}
TAIRAT4G392800phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005331181433148112+
Transcript Sequence

Network for GWHGAAEX013531

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01409.19tRNA-synt_2d2014751.90E-90
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01889FARSA, pheS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0043039Biological ProcesstRNA aminoacylation
GO:0006432Biological Processphenylalanyl-tRNA aminoacylation
GO:0004826Molecular Functionphenylalanine-tRNA ligase activity
GO:0000166Molecular Functionnucleotide binding
GO:0000049Molecular FunctiontRNA binding
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms45.240
SRR2545915Juvenile tuber43.690
SRP108465SRR5643513five period of Gastrodia elata37.740
SRR5643514five period of Gastrodia elata47.920
SRR5643515five period of Gastrodia elata32.450
SRR5643524five period of Gastrodia elata42.000
SRR5643525five period of Gastrodia elata29.720
SRR5643528five period of Gastrodia elata32.230
SRR5643658five period of Gastrodia elata26.100
SRR5643659five period of Gastrodia elata27.870
SRR5643660five period of Gastrodia elata30.960
SRR5643661five period of Gastrodia elata31.390
SRR5643662five period of Gastrodia elata27.120
SRR5643663five period of Gastrodia elata26.600
SRR5643664five period of Gastrodia elata28.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.230
SRR6049655Rhizomagastrodiae_C368-T10_good_137.560
SRR6049656Rhizomagastrodiae_C368-T07_good_135.320
SRR6049657Rhizomagastrodiae_C368-T07_good_126.980
SRR6049658Rhizomagastrodiae_C368-T04_good_125.010
SRR6049659Rhizomagastrodiae_C368-T04_good_120.870
SRR6049660Rhizomagastrodiae_C368-T01_good_129.890
SRR6049661Rhizomagastrodiae_C368-T04_good_128.440
SRR6049662Rhizomagastrodiae_C368-T01_good_145.930
SRR6049663Rhizomagastrodiae_C368-T01_good_138.210
SRR6049664Rhizomagastrodiae_C368-T10_good_145.580
SRR6049665Rhizomagastrodiae_C368-T10_good_145.580
SRP279888GastroGastrodia elata tuber 36.19
JuvenJuvenile tuber38.28
Mother_GastroMother tuber of Gastrodia elata 28.83
Mother_JuvenMother tuber of Juvenile 34.10