Detail information of GWHGAAEX013534/evm.TU.scaffold_50.154
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|110639993|ref|YP_680203.1| | 5.00E-60 | SNF2 family DNA/RNA helicase [Cytophaga hutchinsonii ATCC 33406] |
| KOG | KOG0390 | 0 | DNA repair protein, SNF2 family |
| nr | gi|743860524|ref|XP_010943033.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: DNA repair and recombination protein RAD54 [Elaeis guineensis] |
| Swissprot | tr|A4PBL4|RAD54_ORYSJ | 0 | DNA repair and recombination protein RAD54 |
| trEMBL | tr|M0T1D5|M0T1D5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P24600_001} |
| TAIR | AT3G19210 | 0 | homolog of RAD54 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 3208904 | 3275226 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013534
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00176.22 | SNF2_N | 212 | 499 | 3.70E-53 |
| PF00271.30 | Helicase_C | 550 | 658 | 4.60E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10875 | RAD54L, RAD54 | Homologous recombination | map03440 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.530 |
| SRR2545915 | Juvenile tuber | 2.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.580 |
| SRR5643514 | five period of Gastrodia elata | 6.320 | |
| SRR5643515 | five period of Gastrodia elata | 5.050 | |
| SRR5643524 | five period of Gastrodia elata | 6.460 | |
| SRR5643525 | five period of Gastrodia elata | 4.430 | |
| SRR5643528 | five period of Gastrodia elata | 3.530 | |
| SRR5643658 | five period of Gastrodia elata | 4.600 | |
| SRR5643659 | five period of Gastrodia elata | 4.820 | |
| SRR5643660 | five period of Gastrodia elata | 5.220 | |
| SRR5643661 | five period of Gastrodia elata | 4.840 | |
| SRR5643662 | five period of Gastrodia elata | 5.350 | |
| SRR5643663 | five period of Gastrodia elata | 4.720 | |
| SRR5643664 | five period of Gastrodia elata | 5.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.830 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.80 |
| Juven | Juvenile tuber | 6.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.22 | |
| Mother_Juven | Mother tuber of Juvenile | 6.35 |