Detail information of GWHGAAEX013537/evm.TU.scaffold_50.157
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|556586928|ref|YP_008754524.1| | 4.00E-91 | hypothetical protein SPICUR_06290 [Spiribacter sp. UAH-SP71] |
| KOG | KOG0922 | 0 | DEAH-box RNA helicase |
| nr | gi|743801369|ref|XP_010926340.1| | 0 | PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|P0CE10|Y4102_ARATH | 0 | Putative uncharacterized protein At4g01020, chloroplastic (Precursor) |
| trEMBL | tr|J3MN27|J3MN27_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB07G28090.1} |
| TAIR | AT4G01020_1 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 3391462 | 3433437 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013537
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00271.30 | Helicase_C | 486 | 605 | 7.60E-15 |
| PF04408.22 | HA2 | 667 | 761 | 1.30E-10 |
| PF07717.15 | OB_NTP_bind | 829 | 905 | 1.70E-07 |
| PF01485.20 | IBR | 1612 | 1666 | 1.20E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12818 | DHX8, PRP22 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0004386 | Molecular Function | helicase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 36.660 |
| SRR2545915 | Juvenile tuber | 29.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.660 |
| SRR5643514 | five period of Gastrodia elata | 12.210 | |
| SRR5643515 | five period of Gastrodia elata | 16.270 | |
| SRR5643524 | five period of Gastrodia elata | 13.450 | |
| SRR5643525 | five period of Gastrodia elata | 27.380 | |
| SRR5643528 | five period of Gastrodia elata | 24.320 | |
| SRR5643658 | five period of Gastrodia elata | 16.740 | |
| SRR5643659 | five period of Gastrodia elata | 23.470 | |
| SRR5643660 | five period of Gastrodia elata | 21.360 | |
| SRR5643661 | five period of Gastrodia elata | 23.940 | |
| SRR5643662 | five period of Gastrodia elata | 21.470 | |
| SRR5643663 | five period of Gastrodia elata | 25.500 | |
| SRR5643664 | five period of Gastrodia elata | 22.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.78 |
| Juven | Juvenile tuber | 21.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.02 | |
| Mother_Juven | Mother tuber of Juvenile | 41.18 |