Detail information of GWHGAAEX013539/evm.TU.scaffold_50.159


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|18650724|emb|CAD12248.1|1.61E-63DCL protein [Coffea arabica]
Swissprottr|Q42463|DCL_SOLLC1.00E-59Protein DCL, chloroplastic (Precursor)
trEMBLtr|Q8RVV8|Q8RVV8_COFAR6.00E-64DCL protein {ECO:0000313|EMBL:CAD12248.1}
TAIRAT1G452618.00E-58Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005334499603470228+
Transcript Sequence

Network for GWHGAAEX013539

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11523.7DUF32231091846.00E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms22.150
SRR2545915Juvenile tuber18.760
SRP108465SRR5643513five period of Gastrodia elata14.770
SRR5643514five period of Gastrodia elata17.780
SRR5643515five period of Gastrodia elata14.330
SRR5643524five period of Gastrodia elata16.830
SRR5643525five period of Gastrodia elata23.630
SRR5643528five period of Gastrodia elata28.230
SRR5643658five period of Gastrodia elata24.090
SRR5643659five period of Gastrodia elata21.060
SRR5643660five period of Gastrodia elata23.570
SRR5643661five period of Gastrodia elata21.250
SRR5643662five period of Gastrodia elata26.960
SRR5643663five period of Gastrodia elata25.010
SRR5643664five period of Gastrodia elata26.040
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.960
SRR6049655Rhizomagastrodiae_C368-T10_good_124.860
SRR6049656Rhizomagastrodiae_C368-T07_good_118.040
SRR6049657Rhizomagastrodiae_C368-T07_good_120.070
SRR6049658Rhizomagastrodiae_C368-T04_good_118.720
SRR6049659Rhizomagastrodiae_C368-T04_good_118.910
SRR6049660Rhizomagastrodiae_C368-T01_good_119.000
SRR6049661Rhizomagastrodiae_C368-T04_good_114.070
SRR6049662Rhizomagastrodiae_C368-T01_good_118.600
SRR6049663Rhizomagastrodiae_C368-T01_good_121.220
SRR6049664Rhizomagastrodiae_C368-T10_good_122.280
SRR6049665Rhizomagastrodiae_C368-T10_good_122.280
SRP279888GastroGastrodia elata tuber 28.84
JuvenJuvenile tuber28.15
Mother_GastroMother tuber of Gastrodia elata 20.57
Mother_JuvenMother tuber of Juvenile 31.01