Gene detail

Database	Orthologs	E value	Annotation
KOG	KOG0800	7.00E-31	FOG: Predicted E3 ubiquitin ligase
nr	gi\|672150073\|ref\|XP_008797320.1\|	2.02E-43	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Phoenix dactylifera]
Swissprot	tr\|Q8LPN7\|RNG1L_ARATH	5.00E-28	E3 ubiquitin-protein ligase RING1-like
trEMBL	tr\|M0TH43\|M0TH43_MUSAM	2.00E-52	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P13060_001}
TAIR	AT1G60360	7.00E-31	RING/U-box superfamily protein

Scaffold	Start	End	Strand
GWHAAEX00000053	3745159	3749528	+

Transcript Sequence
>GWHTAAEX013547 AAGCACCCAAATTATATATTAAATATAATAAGGCATTAAAATGTGTACTCTTTAATATTTAGGCGCTTAATCAAAAGGAAGAATTCTAAAGATGACGGCGAAGGCTTCAGTTTTCAGCAATCAAGCTCTCTTCTTACGACAGAAGACAAAGAAAGGAAGTCTTAAAACTTCCTCTGCAGGCTTTCGGCAGACGGAGCGACGATTGCTTCGACCCCAAATTGCTTCCGACAATAAATCGCCCTCTTCCTCGTCCCCGCATTCTCATCATCTCCCAAAGCGCAAGCATCCCTAATGCCTCTCCCTCCTCCTCCTCTTCCTCCTCCCGTCCCTCCGGCCATGTACCGCCTCCCCTTCCGCCTCTTCTGGTGCCATCAATGCCTCCGTACAGTCGCTGTCCTCCCCCCTCTCTCCTCCGCCCTTTCCCCTTTCTGCCCCCGCTGCTTCGGCCCCTTCGTCCACGACCTAAACCTCCCGCCTTTTCCTCCTCCCGCACCAAACCCTAGAGACTACTACGCCGGTCCTAATTTCATCGACGAGCTCCCCCAAAACGACCGCGCAGGACCTCCGCCGGCATCCAACGCCTCAATCGACGCACTGCCGACGGTGGCGATCACACCAGCTCATCTCCGCGACGGATCGGAGTGCCCCGTGTGCAAGGAGGAATTCACCCTCGGGGAAGGCGCCAGGGAGATGCCGTGCCGCCACGTGTTCCACTCCGCCTGCATCGCGCCGTGGCTTCGGCTGCACAACTCCTGCCCTGTCTGCAGGTTTCAGCTTCCCGCCCTACAGACCAACCCAGCTTCCGCCGCCGTAAATCGCCGCTCCAGAGGCGCCACCAGGCGCCGGCATGCGTCGGAAAGGTGGAACCCTTTCGCGGCCTTTTCCAGACTCGATGACGACGATCGGCGACAGCAAAGCGGCGATCCTTTGGAAAGTGCTGCTGATAAAAAAGGCAGGCAACGCTTAGGGTGTTCAAAGTTCGGCGAACGGGTCTGTAGCTTCCGGATTCATTCAATTAAGTTCAAAATAATTCCAGAATTGCTATCTGTACCAATTTGTAAAACTTGAAAATAATAGCATTCTCATATAATTCTGCCAATTGGGTCCCTAACCTCATGATTCAATTTTAAGATATGGCAATATTAACCATTGATATAAAGTTGTAGCTTTCCTTATATTCCTAACACTAAAGTTAGATTAATGCTTTGTACGCATATCCTGCTTGCTAAGTCTATATAAGAAGACAGCCCTCATGAAAGGCAAGTTATCCATATGCATTATTATGCATATAAAAAAAGGGAATTGATACAATAAGCTTTTGCG

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation
Module4

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14369.5	zinc_ribbon_9	23	57	3.10E-10
PF13639.5	zf-RING_2	117	159	3.70E-13

Protein Sequence

Gene family	subfamily
Ubiquitin Family	RING

KO	Enzyme	pathway	mapID
--	--	--	--

GO term	Ontology	Name
GO:0061630	Molecular Function	ubiquitin protein ligase activity

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.010
SRP064423	SRR2545915	Juvenile tuber	1.310
SRP108465	SRR5643513	five period of Gastrodia elata	4.200
	SRR5643514	five period of Gastrodia elata	3.380
	SRR5643515	five period of Gastrodia elata	3.620
	SRR5643524	five period of Gastrodia elata	3.420
	SRR5643525	five period of Gastrodia elata	5.390
	SRR5643528	five period of Gastrodia elata	5.140
	SRR5643658	five period of Gastrodia elata	5.320
	SRR5643659	five period of Gastrodia elata	1.770
	SRR5643660	five period of Gastrodia elata	2.040
	SRR5643661	five period of Gastrodia elata	2.710
	SRR5643662	five period of Gastrodia elata	1.870
	SRR5643663	five period of Gastrodia elata	2.340
	SRR5643664	five period of Gastrodia elata	5.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.780
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.730
SRP279888	Gastro	Gastrodia elata tuber	2.24
	Juven	Juvenile tuber	1.62
	Mother_Gastro	Mother tuber of Gastrodia elata	8.82
	Mother_Juven	Mother tuber of Juvenile	4.89