Gene detail

Detail information of GWHGAAEX013554/evm.TU.scaffold_50.175

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|334145937\|ref\|YP_004508864.1\|	2.00E-06	leucine-rich protein [Porphyromonas gingivalis TDC60]
KOG	KOG1859	2.00E-173	Leucine-rich repeat proteins
nr	gi\|743771805\|ref\|XP_010916192.1\|	0	PREDICTED: uncharacterized protein LOC105041089 isoform X1 [Elaeis guineensis]
trEMBL	tr\|A0A061FWC7\|A0A061FWC7_THECC	0	Binding protein, putative isoform 1 {ECO:0000313\|EMBL:EOY21373.1}
TAIR	AT3G17920	2.00E-173	Outer arm dynein light chain 1 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	3837082	3871166	+

Transcript Sequence
>GWHTAAEX013554 GTCCCTCGGCTGTATTCTTGTTGACATTTTGCCGTTTAGCGGCATAACAAAAGAGACTAGCCTTACCGTTATGGCTTCGCGTCCTCTCACTTCTTCCCGAACTCCGGTCCGTCGCCGACGCTTCCCTCTTCTTCTCCCTACTTTTCTCTCCCGATTCCAATCGCCTATGTTCAATTCCATGGCGGAGGATAGCGTTACTCATCGAAAACCCTAATTTCTTCGCGCCATGGAGATCGTCACCGGAGACCGATACCTCGAATTTCTGGTGAATTTCGTTGACCGAAATGCGGGGGCGCTTCTTGAGGGCTCTCTTACTTTGAAGCTGAACCCTGTGGGGCTACACTATGTGCAGTCCAGGCTGGAAGCGCTGCAGGAGCTCGAGGGATTCCTCGCCGGAGCGCCGGTGGATTTTCTTCGCAGGTACGTTTCCGACCTCGGAGATCACCGCGCGCTTGAGCAGCTTCGCAGGATATTGGGCCTTCTCACGTCGCTTAAGGTGATGTCCGTGCTTCCGCCTCTGGCGCGCGACCCGACTCCGCTCTCTCTTCAACCTTTTCGTCGGCTTAGGGTTCTCGAGCTTCGCGGATGTGACCTCTCGACTTCTTTTCCCCGGGGTATGCTTGAGCTCCGCCGAACGCTCGAGAAGCTTATTTGTCACAATTCTACCAATGCTCTGAGGCATGTTTTCGCTAGTAGGATTGCCGATATAAAGGACTCGCCGGTGTGGGCTCGCCTGAATTTTGTTTCATGTGCTCAGAATAAATTAATTCTAATGGACGAGTCGCTGCAGCTCCTTCCTTTTGTAGAAACTTTAGATCTAAGTCGGAACCAGTTTGCTAAAGTGGATAATATTGGCAGGAGCTCAAAATTGCGGCACCTGGATTTAGGGTTCAATCATTTGAGAACTATTGCACGTTTGAGTGAAGTTTCATGTCCAATAGTTAAGCTTGTTTTAAGGAATAATGCCTTGACTACGTTGCGAGGGATTGAAAATTTGAAGTCAATTGAGGGTCTTGATCTTTCCTGCAATCTCATTTCCTGTTTTTCAGCGGTCGAGACCCTTGCAAACCTTCCTCATCTCCAGAATTTGTGGTTGGAAGGAAATCCTATAAGCTGTGCTAGGTGGTATCGAGCTACTGTTTATAGTTTTTTCTCTCCTTCAGAAAGGTTAATGTTAGACGGTAACCGTATAAGCACAAAAGAGTACTGGGAACGACATGTCATATATGCAAGTAGACAGAAGAAACCTCCAGCTAATGGATTTTATTTCCCTGCAGAAAATCATACTGAAGGAGATAGCAGTTCACACACAGTCAAAAGAAAACATTCTCGTTTAGCAAGTATTGAGAATGAAGAGCAGATGACGCATCACAGTATGGAAGCTATTGAACAAAATTCTATGTCCTGCGATAGTGATATGCTTGGGATGGATGATAATATAGCTCAAGATGATGAGTCAAAAATAGTTGGCATGATGAATAAAGTAGAACAGCTGAAAAAGGAAAGTTCCGTTCTTTGGTTGCGTGACTTTAAGGATTGGATGAATTACGACTCTGAAGTTATAACTTACCGAAATCATCGAATAAATTTTAACGTAAATGCTCAGAGTGTGTCATCTGGGAAACCATTAACAGATGCAAATTTTGGAGAAAACTTGCATCATGCTAACAAAACGTCATGTGAACCAGGTAATGGAAACTTTGTTACATTGAATGATGATATTTTGGATAAAAATGGCATCACTGTCATGGAACCTTTTGTGGTAGATGATGAAAAAAATTCTGTAACTGGTTTAAGTTCTCAGGTTGCCATTTTGGAGCAAAATCAGATAAAGGATGATTTTAGGAATCCAGAGATTTTTTCTCCCTTGATTGTAAAAGACAATGCCTGTGTCTGTTCTTCATCAGTTGGCCAAATTGGATTTTCAGATCTTCCAGTTAGCTCAGCATCATTTACTTCAATTGACGAGATCATTGGATCCCACTCATCGTCCACCTATGCTGGGTCACCACTACATTACAAGGACGACATTTTACAGCAGCGTCTTTCCCTTGAGGAGGAATTGCAACAATCAGCTAAGTCTCACTCTGTGGAATTATCAGATAGTGATACTAGCTGCAGTGATGATGAATCATGTGGGTTCAGTATATCCACGAGTGATGATGATTGTACCTTCATTCAAGGATCATCTGGATTAAAAACTTCAAACCAAGTTGCCATTAATGTTAATAATCACCTATGTGATGACCATGAAGAATCATATTTCTCGGAAAGAAATGTTTCTTTGAGTGAGCATCTTACAAAACACTGTAGTTCTAGCAGTGAAGCAACATCCTCTTTCAACAATTATGTTGATGCTACTAGGTTCTACACTAGTTCACAGCTAAATCAAGGTGCTGGAAAAATTGAAAGGATAAATTGTAAACAGCAGTTTAAGAGGGGATTTGTCTCTGTTTTTGGGAACTCGTTATCATGCAATACTCACTTCTCCAAATGCGTGAAGGCAAATGGAGATATAGAATCATGCAGATTTGAAAAAATTGATGTGCAGGATCAATCATTCTGCTGTGCAAATGATGACAGTTTTGATAGGATGAATATTGAACTTCTGCAGTCAAAACACAAGGAAGAAACTAGATTTATAAAAAAGGGGAAAAATGATCATTTAAAGAAATTTATTAACTCCTATATTGCTAATTCTGAAGCTTCTAAAACATGCCAACAAATTGTTTTTTGTGGATGCATATACCAGCATGGACCACTTTCTTGTGAGAGTGAAGCTGCTTTGATAAGGAGCTGTAAAAACAAGTTATATCTGCTGCTACTGGATATAAAGGATGCTGGAGTGGATGCCGTTTCCGGCGTTCAAGAATGCCACAGAATTGATGAGATTCGGGAAGTTGTTACCGGCCTCGGACTGCAAGTTCTGAGGGCGTGCATGGAGGAAGGCAGGGCTTATCTTCTCCTAACAAGAACAATCCAGATGTCGGAAGACGTATTCAATCTGCTGCAACTGCACGATTCGAGCGCACCAGCTGCAAGATGTTCTCTAAGAAGCTGGGAGCAAGTTCAGGTTGATTTGCTGGAGAAATGCGTTGCAGGGAGTTTCTGCAAAGGAATATACTTCTATTCGATGCTTCTCTTTTGGCACGACAGATGCGAAGGGAAGCCATGGCTGCCAAGATCATTGTTTGTGATTGAAGGGCATATTATCGTGTGCAGGGAGAACCTCGCCCAGTTCGGCTTGCCTGCTGAATGCCTCGGAAAATCTCCTTATTTCTCTCTTGAATTTCACTGCCCCATACAGAACATCCTGGAAGCAGTGATGGAAGCAGAAGAAGGGGATGATGAAGGCAGATACTTGACTCTATTGATATCAGGAGATGATGATTCCAGCGGCAAAAAGGCAGCGGGGATTCCTCAAGAAGAAGAAAAAGATGGAGGTGAAGGAAGAGAGAAGGTGGATAGCTGCCGCACGTGGAAACTGAAGTGGTTCTCTGAAGATTACCTGACGCGTTTCCTGACTCTGATCAAGGCGTTGTATTTGGGGGTTTCCTCCACCTCGCTACCTGTAAAGTGTGCTGCTTCATAGTGCCTTTTTCATTTTATTTATTTCAAATTTTGTTTGTTTGTTTGTTTGTTTGCTTTTTATTCAATTTATTCATTTTTGTTCCATTTTATTTTTGTGAATAGTTTTTGTTAATGTATTTATGTACAGTTTAGCTTGAGTCGCAGTCTGTAGTTTCAATAAGGCGTTTGTAGCGTTGTTCATATCTTCCATAAAGACTGCATATGATTTATTTATAATTAGAATATTTGTTATATTGGTATTTGGTAAGTGTAATTCCCGA

Network for GWHGAAEX013554

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX013554
MEIVTGDRYLEFLVNFVDRNAGALLEGSLTLKLNPVGLHYVQSRLEALQELEGFLAGAPVDFLRRYVSDLGDHRALEQLRRILGLLTSLKVMSVLPPLARDPTPLSLQPFRRLRVLELRGCDLSTSFPRGMLELRRTLEKLICHNSTNALRHVFASRIADIKDSPVWARLNFVSCAQNKLILMDESLQLLPFVETLDLSRNQFAKVDNIGRSSKLRHLDLGFNHLRTIARLSEVSCPIVKLVLRNNALTTLRGIENLKSIEGLDLSCNLISCFSAVETLANLPHLQNLWLEGNPISCARWYRATVYSFFSPSERLMLDGNRISTKEYWERHVIYASRQKKPPANGFYFPAENHTEGDSSSHTVKRKHSRLASIENEEQMTHHSMEAIEQNSMSCDSDMLGMDDNIAQDDESKIVGMMNKVEQLKKESSVLWLRDFKDWMNYDSEVITYRNHRINFNVNAQSVSSGKPLTDANFGENLHHANKTSCEPGNGNFVTLNDDILDKNGITVMEPFVVDDEKNSVTGLSSQVAILEQNQIKDDFRNPEIFSPLIVKDNACVCSSSVGQIGFSDLPVSSASFTSIDEIIGSHSSSTYAGSPLHYKDDILQQRLSLEEELQQSAKSHSVELSDSDTSCSDDESCGFSISTSDDDCTFIQGSSGLKTSNQVAINVNNHLCDDHEESYFSERNVSLSEHLTKHCSSSSEATSSFNNYVDATRFYTSSQLNQGAGKIERINCKQQFKRGFVSVFGNSLSCNTHFSKCVKANGDIESCRFEKIDVQDQSFCCANDDSFDRMNIELLQSKHKEETRFIKKGKNDHLKKFINSYIANSEASKTCQQIVFCGCIYQHGPLSCESEAALIRSCKNKLYLLLLDIKDAGVDAVSGVQECHRIDEIREVVTGLGLQVLRACMEEGRAYLLLTRTIQMSEDVFNLLQLHDSSAPAARCSLRSWEQVQVDLLEKCVAGSFCKGIYFYSMLLFWHDRCEGKPWLPRSLFVIEGHIIVCRENLAQFGLPAECLGKSPYFSLEFHCPIQNILEAVMEAEEGDDEGRYLTLLISGDDDSSGKKAAGIPQEEEKDGGEGREKVDSCRTWKLKWFSEDYLTRFLTLIKALYLGVSSTSLPVKCAAS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.140
SRP064423	SRR2545915	Juvenile tuber	12.280
SRP108465	SRR5643513	five period of Gastrodia elata	11.230
	SRR5643514	five period of Gastrodia elata	9.860
	SRR5643515	five period of Gastrodia elata	11.390
	SRR5643524	five period of Gastrodia elata	9.800
	SRR5643525	five period of Gastrodia elata	15.370
	SRR5643528	five period of Gastrodia elata	17.260
	SRR5643658	five period of Gastrodia elata	19.660
	SRR5643659	five period of Gastrodia elata	9.430
	SRR5643660	five period of Gastrodia elata	10.310
	SRR5643661	five period of Gastrodia elata	9.940
	SRR5643662	five period of Gastrodia elata	9.650
	SRR5643663	five period of Gastrodia elata	10.900
	SRR5643664	five period of Gastrodia elata	11.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.170
SRP279888	Gastro	Gastrodia elata tuber	13.70
	Juven	Juvenile tuber	13.35
	Mother_Gastro	Mother tuber of Gastrodia elata	25.27
	Mother_Juven	Mother tuber of Juvenile	51.21