Detail information of GWHGAAEX013556/evm.TU.scaffold_50.177
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302670881|ref|YP_003830841.1| | 1.00E-13 | endo-1,3(4)-beta-glucanase [Butyrivibrio proteoclasticus B316] |
| nr | gi|695053401|ref|XP_009414788.1| | 1.37E-149 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q38909|XTH28_ARATH | 9.00E-135 | Probable xyloglucan endotransglucosylase/hydrolase protein 28 (Precursor) |
| trEMBL | tr|M0TV36|M0TV36_MUSAM | 4.00E-150 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
| TAIR | AT1G14720 | 3.00E-134 | xyloglucan endotransglucosylase/hydrolase 28 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 3923953 | 3926242 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013556
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 53 | 233 | 3.10E-53 |
| PF06955.11 | XET_C | 274 | 306 | 2.10E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042546 | Biological Process | cell wall biogenesis |
| GO:0006073 | Biological Process | cellular glucan metabolic process |
| GO:0010411 | Biological Process | xyloglucan metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0048046 | Cellular Component | apoplast |
| GO:0005618 | Cellular Component | cell wall |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.150 |
| SRR2545915 | Juvenile tuber | 12.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.780 |
| SRR5643514 | five period of Gastrodia elata | 22.970 | |
| SRR5643515 | five period of Gastrodia elata | 20.060 | |
| SRR5643524 | five period of Gastrodia elata | 17.450 | |
| SRR5643525 | five period of Gastrodia elata | 4.200 | |
| SRR5643528 | five period of Gastrodia elata | 3.060 | |
| SRR5643658 | five period of Gastrodia elata | 4.640 | |
| SRR5643659 | five period of Gastrodia elata | 21.770 | |
| SRR5643660 | five period of Gastrodia elata | 16.810 | |
| SRR5643661 | five period of Gastrodia elata | 32.480 | |
| SRR5643662 | five period of Gastrodia elata | 8.570 | |
| SRR5643663 | five period of Gastrodia elata | 15.300 | |
| SRR5643664 | five period of Gastrodia elata | 9.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.82 |
| Juven | Juvenile tuber | 8.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.00 | |
| Mother_Juven | Mother tuber of Juvenile | 7.20 |