Detail information of GWHGAAEX013561/evm.TU.scaffold_50.184
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-48 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672111106|ref|XP_008799001.1| | 0 | PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Phoenix dactylifera] |
| Swissprot | tr|Q9ZPS9|BRL2_ARATH | 0 | Serine/threonine-protein kinase BRI1-like 2 (Precursor) |
| trEMBL | tr|B9HJL5|B9HJL5_POPTR | 0 | Leucine-rich repeat transmembrane protein kinase {ECO:0000313|EMBL:EEE89854.1} |
| TAIR | AT2G01950 | 0 | BRI1-like 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 3982531 | 3987229 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013561
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 44 | 80 | 8.10E-11 |
| PF13855.5 | LRR_8 | 209 | 267 | 4.60E-09 |
| PF13855.5 | LRR_8 | 474 | 534 | 4.30E-07 |
| PF00560.32 | LRR_1 | 616 | 634 | 0.62 |
| PF00069.24 | Pkinase | 839 | 1108 | 1.10E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-Xb-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.850 |
| SRR2545915 | Juvenile tuber | 19.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.480 |
| SRR5643514 | five period of Gastrodia elata | 12.720 | |
| SRR5643515 | five period of Gastrodia elata | 10.100 | |
| SRR5643524 | five period of Gastrodia elata | 11.570 | |
| SRR5643525 | five period of Gastrodia elata | 11.930 | |
| SRR5643528 | five period of Gastrodia elata | 4.320 | |
| SRR5643658 | five period of Gastrodia elata | 10.270 | |
| SRR5643659 | five period of Gastrodia elata | 13.090 | |
| SRR5643660 | five period of Gastrodia elata | 18.260 | |
| SRR5643661 | five period of Gastrodia elata | 17.180 | |
| SRR5643662 | five period of Gastrodia elata | 43.680 | |
| SRR5643663 | five period of Gastrodia elata | 35.320 | |
| SRR5643664 | five period of Gastrodia elata | 64.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.07 |
| Juven | Juvenile tuber | 25.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.89 | |
| Mother_Juven | Mother tuber of Juvenile | 12.86 |