Gene detail

Detail information of GWHGAAEX013565/evm.TU.scaffold_50.188

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|702258005\|ref\|XP_010029695.1\|	2.92E-69	PREDICTED: telomeric repeat-binding factor 2-like isoform X1 [Eucalyptus grandis]
Swissprot	tr\|Q6WLH3\|SMH5_MAIZE	6.00E-10	Single myb histone 5
trEMBL	tr\|A0A059CZK2\|A0A059CZK2_EUCGR	1.00E-69	Uncharacterized protein {ECO:0000313\|EMBL:KCW83596.1}
TAIR	AT1G15720	3.00E-11	TRF-like 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	3992274	4007170	-

Transcript Sequence
>GWHTAAEX013565 AAAGAGATATTTGAGGGGCACGACGCCCGCTCGGCAATTGGCAAGAACTCCAAGAATCCATCCCTAAAAGAAGAGTGCAGAAAGGAAACCTTTCCGATGATCAATGAATGATCTTTCAAACCTAAATGGACAAGCCATCTTCCTCCTCTTCTCCATCCTCCGCCCTGCTCCGTCACCCTCTATCTTCTCCCCTCACACGGCCGCAGGTCGACGACCTCGCCGTCACTTGGATCCTCGAATTCGTTCTTCGACAGCCGTTACCCGACTCCCTTGCCCATGAGATATTTTTCTCCCTCCCGTTCTCTTCCTCAGATCTCCACCCTCACCTCCGCAAAACCCTTCTCATCCGTCGCATCGCTTCCGAACTCCAGCGCTGCTGTCTTTCGGAGTGTACGCTGCACGCCCTAGAGCTAATAGCGGAACTCGATCGCCAGCGGGGCGTGTTCCCCTCGCATCGCTTGAAGTCCGCTTACTGCGCTGTCTCCGTTGAATGCGCCGTCCTTGCATTCCGGAAGAATGGCCGGGATTTTTCAGACGCCGTTGAGAGGTTTTTTATGGAGGAGGAAGCAGGTGGTCTTGGGTCGGAGTTGCTCGTGGAGTGGGGGAAGAAGATAAAGTTTTGTCTTTCGAGCGGGAAAGGATGCGAAGAGATTCTTAAGAGGGATGCAGAGGGTGCGTTGAGGTTGGTGAGGGGTTATTTAAATGAAGCGCTGGAGGAGATGGGGCCATCTTTTCTGGAGATAGCGGCAGCGGAGTTCGTGGAAAAGAGGATAACTTTGAATGTGGCTCCGGACAAAGAAGGTAAAAGTGTCGCTGTTTTAAATGGCTTTTTTGAGAAATTGGATGAAAATAGCGAGGAGTTGGAAGATTGTGGAGTGGGTATTTCTTTGGGGACTGTGGAAAAGGATGGGCTTCCTGAACGATTAATTAGTATGCCAGATGCTTCTGGAAATAATTTAAGAGTTGGTATGGTTAGAAAGGAGTTTGATGGCCCGGATGAAGCTTCCACTAAACAATATGGCGACTTTCAAGAAAACAATGAAAAGGCTGATAATGTTGGCGGGCATGATATGCCTCATCTTTGCGGATCTAAAATTCATCAAGTCGATCCTGGCGAAGTTTGCAAAGTGAAGGATGCCTTAAAGAAGAGCTGCTTTGATTTAAAGATGGCGGTGGAAGACCCTCTGCCAGAAGCACAGGCGGTTGCAGCTGCTGTGTTAGCTAGCCTATCTCATGACCAGTTGTTATTCCATGAAAGTGCAAAGCAAAGTTTTGTGGAAGCTTCCACTAGAGCGAACCTTAGCACTGGTGACTTGGAAAAAGAGGAGCTTGTTATTGGCAGGAACTCATCTAATGTGAATCAAGTCGAAGGAAATCATATTGTTAAAGCATGCAATATGAATGCTGGGCCAAGCAAGAAGAGAGACAATGTAGCATGTCAATATCTCTTTGAAAAGAATTCAACTGCTAATACTAGAGAGTGGAGTGATGATTCCATTGAGTCGCCAGTCTCTATGGAAAAACTTCAGTATCTCAATCCGATGAAGAGAAGAATATCTTTAACAAGGTTAGATGATGGAAAGTGTGTCAAAAGAAGAGTTGTTAAAAGATGGACTTCAGACGAAGAACATGCATTGAGGGAAGCTGTAGCAAAGTATGGCAGAGGAAACTGGAAATTAATTCGGAATTGTCATCCAGTAATATTTGAAGAGAGAACAGAGGTCGATTTGAAGGATAAATGGAGAAACATGACTCGGCAGTTATTGTAGTTCTCATCCAATTGCAATTTCATCTTTTGATTTCTGGAGATCCTTAATAGAAGAAAATGGAGAAGAGTGCACAAGTTCAGGTGCAAATTAGTAAAAAGAAGAAAAGATTTTGCACAAATTCCAAGTAGACTGAAGAACGAAAGCCTCAAAGGAGGATCCTAAGATTGAGAATAGTTCTCTATTTCACGAGCCAGTTCGCTCGTTAACTGATCTGCTCTTTCATCTTGCCCTCCTGCAAAGTTATAAACTCGAAATGCCAGCTGAAATGCCCTCCATAGTAGCTTGGAAGGGTGGTCATGCTTTGATTTAAGCTTGGGATCCTCTGCTCTCTCCTTTGCATTTTTGTTCTCCTGCAGTTTCAGCATAAAAGTTGAATACAGTGATCAGTTGGCCAGAAACCAGCTTCAACAAAATTGTAAATTTGGCAATGGATAGTAATTCCTATTGTTTAATTTTGAAACCAATGGCATAAAAGTTCATAAATAAACATTATATTTGAATTTATTGAATTTGAGGTCGGCATTGATCTTTATATATACCTCGAGTGCCATTTCGATGCAGTTGGATGACAGATCAACTGTCACTTCCTTGATTTTCATAAGAATGCCAAAGTCGAAATCAATGTTGTTACTCTTCAGCCTCTTTGATTCTTCATCTTTGTTGCGTTCAATTGCATCTACTTCTTCTTTAAT

Network for GWHGAAEX013565

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	495	542	2.70E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.810
SRP064423	SRR2545915	Juvenile tuber	9.270
SRP108465	SRR5643513	five period of Gastrodia elata	13.070
	SRR5643514	five period of Gastrodia elata	12.010
	SRR5643515	five period of Gastrodia elata	10.260
	SRR5643524	five period of Gastrodia elata	12.890
	SRR5643525	five period of Gastrodia elata	10.620
	SRR5643528	five period of Gastrodia elata	10.680
	SRR5643658	five period of Gastrodia elata	10.440
	SRR5643659	five period of Gastrodia elata	9.460
	SRR5643660	five period of Gastrodia elata	11.310
	SRR5643661	five period of Gastrodia elata	9.680
	SRR5643662	five period of Gastrodia elata	5.800
	SRR5643663	five period of Gastrodia elata	4.730
	SRR5643664	five period of Gastrodia elata	5.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.730
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.210
SRP279888	Gastro	Gastrodia elata tuber	11.96
	Juven	Juvenile tuber	14.86
	Mother_Gastro	Mother tuber of Gastrodia elata	13.08
	Mother_Juven	Mother tuber of Juvenile	16.09