Gene detail

Detail information of GWHGAAEX013566/evm.TU.scaffold_50.190

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108758096\|ref\|YP_633597.1\|	7.00E-09	M36 family peptidase [Myxococcus xanthus DK 1622]
nr	gi\|672164898\|ref\|XP_008802338.1\|	0	PREDICTED: vacuolar-sorting receptor 6-like [Phoenix dactylifera]
Swissprot	tr\|Q9FYH7\|VSR6_ARATH	0	Vacuolar-sorting receptor 6 (Precursor)
trEMBL	tr\|F6HEY1\|F6HEY1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51041.1}
TAIR	AT1G30900	0	VACUOLAR SORTING RECEPTOR 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	4031676	4039648	+

Transcript Sequence
>GWHTAAEX013566 GGAGGACCGATGGCATTCAAAAATAAATTTCGGTCGTCACTCTTGGAGTGCTCACGACTCCGACGGGGGTTGCTTGCTCGTCACTCTCACTACCGAACTCCTGCTGGGCTCCGGCTCTTTTCTACTTTTGGAGTTTTAATAAACCCAAGAAACCCGGTTAATGGAGTCCGGCCGGCGATGGAGGGCGCAGCTCTATCTCATACTGACGGTGGCAGCGGTGATTCTGAGCTCCGTGAAGGGGATGTTCGTGGTGGAGCAGAGCAGCGTTCTCGTTCTGAGGCCAGCTCACATCCGTGGGAGGCACCAAAGTGCCATTGCCAACTTTGGAATCCCTAAATACGGGGGAACGCTGAGGGGAGTTGTTCTCTACCCTGGAAAGGGCTCCACAGGCTGCAGCCCCTTTGATGCCGATCATTTCAAGTCTCGGTCGGGACGCCCCGTTATCCTTCTGCTCGATCGCGGAGATTGCTACTTCACTCTAAAGGCATGGAATGCTCAGAATTCTGGGGTTGCTGCAGTTCTGATTGCTGACAACATAGATGAACCTTTGATCACCATGGATACTCCTGAAGAGAGTAAAGATGATGGTTATGTTGAACAGATCAAGATTCCTTCAGCTCTGATCAATCGAGAATTCGGTGAGGCCCTTAAGATTGCAGTAAAAAAGGGTTCTGATGAAGTTGTAGTGAATTTAGATTGGAGGGAGTCTATACCTCATCCAGACGAGAGGGTGGAGTATGAATTCTGGACAAGCAGCAATGATGAATGTGGCACCCGGTGCAATGATCAAATGAATTTTGTTCAGAACTTTAAGGGACATGCTCAGATTCTTGAGAGAGGAGGATATACTTTGTTTACTCCTCATTACATTACCTGGTATTGCCCCGAGGTTTTTTTTCGTAGTAAACAGTGTAAGTCTCAATGTATAAACCATGGTAGATATTGTGCTCCCGACCCTGAGCAGGACTTCTCAGAGGGGTACGAAGGCAGGGATGTCGTCATTGAAAATTTGAGGCAGCTTTGTGTGCACAAAGTGGCTAGTGAGAGTAACCGGTCATGGGTTTGGTGGGATTATGTTACAGATTTTCATGTTAGATGCTCCATGAAGGAAATGAAATTTAGCCGTGATTGTGCAGATGATGTTATTAAATCCTTGGGTATGCCTCTTGATAAAGTCAAAGAGTGCATGGGAGATCCTGATGCAGATGTTGAGAATTCTGTGCTGAAAAAGGAGCAAAAGCTTCAGGTTGGTCATGACCAGCGCAGTGATGTTACCATTCTGCCAACCATTGTTGTCAACAACATTCAGTATCGCGGAATTCTTGAGCGGGTAACTGTGCTAAAAGCAATATGTGCTGGATTCAAAGAATCAACAGAACCTCCTGTTTGTTTGAGTGAAGATATTGAGACTAACGAGTGCCTTGAGAATAATGGGGGTTGCTGGCAGGACTTGCAAATGAATGTAACAGCTTGCAAGGATACTTTTCGTGGAAGAATCTGTAAGTGCCCTACAGTGAATGGTGTTCAGTATCAGGGTGATGGATATATTTCCTGCAAAGCTGTGGGGCCTGGAAGGTGTGTAGTTGGTAATGGCAACTGCTGGCTGGAAACTAAGGACGGGGAAACATTTTCCGCATGCTCAGATTATGACTTGAGCGGCTGCCGCTGCCCTTTGGGTTTCCATGGCGATGGTTATAAATGTGTAGATATTAATGAATGCAAGGAAAAACTGGCATGCCAGTGTGATGGATGCTCCTGCAAAAATACATGGGGTGGATTTGATTGCAAATGTAAAGGGAATCTTTTGTATTTAAGGGGAGAGGACACTTGCATTGCTAAAAATGCTTCAAGATTTGGATGGCTGTTATCACTCCTGGTAGTATCCTGTGTTGCTGGTGCTGGAATAGCTGCCTATATTTTCTATAAATACAGATTAAGATCTTACATGGATTCGGAGATAATGGCAATCATGTCTCAGTACATGCCTCTTGACAAAAACTACAGTGAAGCTCAACCTCTGCGACCAGATTCTGCCATATGATAACAGGAGTTTGTTGATTTAACACTAGGCTTAGCTTGTATCATATATGCCCTATAATGCTTGTGGCTACAATACAATAAGTTGATGACAGAATACAGATTCTGTAGTTAAAAGAAAAGTAATGACTTTAGGATTCTTAAATTTATGTGGTATATGATACGTTGTAATAATGTATATTACGGATGATTTATCTGATGCAAAATAAATGGTGAAGGGTGAGAATACATGGAAGAAGGATTTATTGTTATAGCTCATAGTTTAAGCTAATAATGTGATTTGAGAGTATCATGTATTGAATATATAAGGATTTGCCACAATAAATTAAAGGTTCAAGTAATTGTTGCTATAAATAAGTATTTGATTTATATTATGTAATTAAATCTATAAGGTGTTACAG

Network for GWHGAAEX013566

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02225.21	PA	70	163	6.30E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.010
SRP064423	SRR2545915	Juvenile tuber	21.780
SRP108465	SRR5643513	five period of Gastrodia elata	27.590
	SRR5643514	five period of Gastrodia elata	28.040
	SRR5643515	five period of Gastrodia elata	22.520
	SRR5643524	five period of Gastrodia elata	26.720
	SRR5643525	five period of Gastrodia elata	169.930
	SRR5643528	five period of Gastrodia elata	142.330
	SRR5643658	five period of Gastrodia elata	338.320
	SRR5643659	five period of Gastrodia elata	15.410
	SRR5643660	five period of Gastrodia elata	19.190
	SRR5643661	five period of Gastrodia elata	18.280
	SRR5643662	five period of Gastrodia elata	15.690
	SRR5643663	five period of Gastrodia elata	16.290
	SRR5643664	five period of Gastrodia elata	19.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.600
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.490
SRP279888	Gastro	Gastrodia elata tuber	21.10
	Juven	Juvenile tuber	19.49
	Mother_Gastro	Mother tuber of Gastrodia elata	64.42
	Mother_Juven	Mother tuber of Juvenile	32.73