Detail information of GWHGAAEX013567/evm.TU.scaffold_50.191


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|315497978|ref|YP_004086782.1|5.00E-2650S ribosomal protein L22 [Asticcacaulis excentricus CB 48]
KOGKOG17112.00E-68Mitochondrial/chloroplast ribosomal protein L22
nrgi|115438596|ref|NP_001043578.1|1.02E-99Os01g0616500 [Oryza sativa Japonica Group]
Swissprottr|P49558|RK22_ODOSI4.00E-2050S ribosomal protein L22, chloroplastic
trEMBLtr|A2WSM4|A2WSM4_ORYSI4.00E-100Putative uncharacterized protein {ECO:0000313|EMBL:EAY74970.1}
TAIRAT1G523702.00E-68Ribosomal protein L22p/L17e family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005340446434076223+
Transcript Sequence

Network for GWHGAAEX013567

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00237.18Ribosomal_L221372356.50E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02890RP-L22, MRPL22, rplV Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome
GO:0015934Cellular Componentlarge ribosomal subunit

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms45.440
SRR2545915Juvenile tuber48.870
SRP108465SRR5643513five period of Gastrodia elata44.560
SRR5643514five period of Gastrodia elata37.210
SRR5643515five period of Gastrodia elata42.840
SRR5643524five period of Gastrodia elata33.810
SRR5643525five period of Gastrodia elata45.090
SRR5643528five period of Gastrodia elata31.560
SRR5643658five period of Gastrodia elata33.160
SRR5643659five period of Gastrodia elata60.090
SRR5643660five period of Gastrodia elata62.040
SRR5643661five period of Gastrodia elata57.230
SRR5643662five period of Gastrodia elata61.430
SRR5643663five period of Gastrodia elata51.150
SRR5643664five period of Gastrodia elata65.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_150.430
SRR6049655Rhizomagastrodiae_C368-T10_good_121.920
SRR6049656Rhizomagastrodiae_C368-T07_good_144.570
SRR6049657Rhizomagastrodiae_C368-T07_good_168.780
SRR6049658Rhizomagastrodiae_C368-T04_good_155.170
SRR6049659Rhizomagastrodiae_C368-T04_good_158.320
SRR6049660Rhizomagastrodiae_C368-T01_good_153.300
SRR6049661Rhizomagastrodiae_C368-T04_good_154.820
SRR6049662Rhizomagastrodiae_C368-T01_good_141.610
SRR6049663Rhizomagastrodiae_C368-T01_good_137.530
SRR6049664Rhizomagastrodiae_C368-T10_good_136.490
SRR6049665Rhizomagastrodiae_C368-T10_good_136.490
SRP279888GastroGastrodia elata tuber 67.49
JuvenJuvenile tuber71.11
Mother_GastroMother tuber of Gastrodia elata 50.28
Mother_JuvenMother tuber of Juvenile 51.30