Detail information of GWHGAAEX013571/evm.TU.scaffold_50.197
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|451946954|ref|YP_007467549.1| | 2.00E-08 | putative divalent heavy-metal cations transporter [Desulfocapsa sulfexigens DSM 10523] |
| KOG | KOG1558 | 8.00E-129 | Fe2+/Zn2+ regulated transporter |
| nr | gi|720015045|ref|XP_010260702.1| | 3.08E-137 | PREDICTED: zinc transporter 8-like [Nelumbo nucifera] |
| Swissprot | tr|O81123|ZIP1_ARATH | 2.00E-129 | Zinc transporter 1 (Precursor) |
| trEMBL | tr|M0U4Z1|M0U4Z1_MUSAM | 5.00E-137 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P30840_001} |
| TAIR | AT3G12750 | 8.00E-129 | zinc transporter 1 precursor |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 4196199 | 4198396 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013571
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02535.21 | Zip | 41 | 355 | 6.40E-71 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030001 | Biological Process | metal ion transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0071577 | Biological Process | zinc II ion transmembrane transport |
| GO:0046873 | Molecular Function | metal ion transmembrane transporter activity |
| GO:0005385 | Molecular Function | zinc ion transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.160 |
| SRR2545915 | Juvenile tuber | 0.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.640 |
| SRR5643514 | five period of Gastrodia elata | 5.790 | |
| SRR5643515 | five period of Gastrodia elata | 8.920 | |
| SRR5643524 | five period of Gastrodia elata | 5.050 | |
| SRR5643525 | five period of Gastrodia elata | 3.630 | |
| SRR5643528 | five period of Gastrodia elata | 3.650 | |
| SRR5643658 | five period of Gastrodia elata | 1.400 | |
| SRR5643659 | five period of Gastrodia elata | 2.790 | |
| SRR5643660 | five period of Gastrodia elata | 3.000 | |
| SRR5643661 | five period of Gastrodia elata | 7.010 | |
| SRR5643662 | five period of Gastrodia elata | 5.950 | |
| SRR5643663 | five period of Gastrodia elata | 2.160 | |
| SRR5643664 | five period of Gastrodia elata | 15.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 63.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 45.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 61.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 61.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.88 |
| Juven | Juvenile tuber | 1.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.09 | |
| Mother_Juven | Mother tuber of Juvenile | 0.89 |