Detail information of GWHGAAEX013588/evm.TU.scaffold_50.216


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41976.00E-148FOG: PPR repeat
nrgi|672180387|ref|XP_008810384.1|0PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Phoenix dactylifera]
Swissprottr|Q9ZQE5|PP153_ARATH2.00E-152Pentatricopeptide repeat-containing protein At2g15690
trEMBLtr|F6HQB8|F6HQB8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB56875.1}
TAIRAT2G15690_26.00E-148Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005347342354736209-
Transcript Sequence

Network for GWHGAAEX013588

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR1771931.3
PF01535.19PPR2672962.50E-05
PF01535.19PPR3383610.77
PF14432.5DYW_deaminase4435285.20E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms41.530
SRR2545915Juvenile tuber36.450
SRP108465SRR5643513five period of Gastrodia elata25.130
SRR5643514five period of Gastrodia elata24.530
SRR5643515five period of Gastrodia elata20.970
SRR5643524five period of Gastrodia elata24.160
SRR5643525five period of Gastrodia elata14.060
SRR5643528five period of Gastrodia elata6.450
SRR5643658five period of Gastrodia elata6.980
SRR5643659five period of Gastrodia elata45.540
SRR5643660five period of Gastrodia elata47.430
SRR5643661five period of Gastrodia elata44.740
SRR5643662five period of Gastrodia elata42.570
SRR5643663five period of Gastrodia elata43.150
SRR5643664five period of Gastrodia elata45.980
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.330
SRR6049655Rhizomagastrodiae_C368-T10_good_143.360
SRR6049656Rhizomagastrodiae_C368-T07_good_136.220
SRR6049657Rhizomagastrodiae_C368-T07_good_133.080
SRR6049658Rhizomagastrodiae_C368-T04_good_127.590
SRR6049659Rhizomagastrodiae_C368-T04_good_126.290
SRR6049660Rhizomagastrodiae_C368-T01_good_138.920
SRR6049661Rhizomagastrodiae_C368-T04_good_130.840
SRR6049662Rhizomagastrodiae_C368-T01_good_140.060
SRR6049663Rhizomagastrodiae_C368-T01_good_140.440
SRR6049664Rhizomagastrodiae_C368-T10_good_136.730
SRR6049665Rhizomagastrodiae_C368-T10_good_136.730
SRP279888GastroGastrodia elata tuber 36.44
JuvenJuvenile tuber38.72
Mother_GastroMother tuber of Gastrodia elata 9.41
Mother_JuvenMother tuber of Juvenile 12.13