Detail information of GWHGAAEX013595/evm.TU.scaffold_50.223
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 1.00E-26 | MADS box transcription factor |
| nr | gi|695002976|ref|XP_009383060.1| | 1.97E-37 | PREDICTED: MADS-box transcription factor 29-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9XGJ4|GGM13_GNEGN | 1.00E-37 | MADS-box protein GGM13 |
| trEMBL | tr|M0S4K7|M0S4K7_MUSAM | 7.00E-38 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P02660_001} |
| TAIR | AT2G03710 | 1.00E-26 | K-box region and MADS-box transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 4866898 | 4870772 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013595
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 7.90E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-M-type |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.570 |
| SRR2545915 | Juvenile tuber | 0.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.200 |
| SRR5643514 | five period of Gastrodia elata | 6.460 | |
| SRR5643515 | five period of Gastrodia elata | 3.100 | |
| SRR5643524 | five period of Gastrodia elata | 7.370 | |
| SRR5643525 | five period of Gastrodia elata | 0.320 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.100 | |
| SRR5643659 | five period of Gastrodia elata | 0.490 | |
| SRR5643660 | five period of Gastrodia elata | 0.530 | |
| SRR5643661 | five period of Gastrodia elata | 0.300 | |
| SRR5643662 | five period of Gastrodia elata | 0.530 | |
| SRR5643663 | five period of Gastrodia elata | 0.820 | |
| SRR5643664 | five period of Gastrodia elata | 0.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.93 |
| Juven | Juvenile tuber | 3.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.61 | |
| Mother_Juven | Mother tuber of Juvenile | 7.63 |