Gene detail

Detail information of GWHGAAEX013598/evm.TU.scaffold_50.227

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1812	8.00E-137	Predicted E3 ubiquitin ligase
nr	gi\|720080832\|ref\|XP_010242090.1\|	1.32E-155	PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Nelumbo nucifera]
Swissprot	tr\|P0CE10\|Y4102_ARATH	6.00E-11	Putative uncharacterized protein At4g01020, chloroplastic (Precursor)
trEMBL	tr\|M5WMV1\|M5WMV1_PRUPE	4.00E-149	Uncharacterized protein {ECO:0000313\|EMBL:EMJ15122.1}
TAIR	AT4G19670	8.00E-137	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	4966242	4972980	+

Transcript Sequence
>GWHTAAEX013598 GATTTAATGAAGTTTAGGGGCTCTGCGCAAAAGAACCTCAAAATTTTCACGCTTTCGTACTAACAGGAGTGATTGATTACCTGTGCACGCTATCATCCCCGATCTGCCTCCGGTCGAATATAATCGATTGGTTGTTCCGGCGGCCCATCGCCGCCCTAAAATGTTCCGGCAGCCCGCTCTTTTAGATTTATTCTTGTAGCTGAGTGCCCTGCGGCCTCTCACTCTCTCTCTGGCGTTTTCCAAGGGTCCTTCTTCATGGAGGATTCCTGGAGCGCTGGAAGATCCTGAACGATTTTGGCTCGTCTCTTTGTGGTTTTTTAACTTTTGAATTTTATTTTTGCGGAAGATCTAGATTCTAGAGCTCCTTTTTTGGTTGTTGCAGAGAGGCGTTCATTGTTGGATGTATTGTTGAGATGGTTTTCAAGTTGTTGGGTTGTTAGATTTGCTTGGGCGCTGTAAGGCCAAGATTGGCTGCCGATGGAGGAAAGAGAATCTGGTACTGATCTGAATTTGGGAAGTTCGGGTGTAGATGATGAATTTAAGAGCTGCGGTGAGGAAGATGAGGATTGGCAGGATGCAGAGGAATCCTTATCTGAAGGACCAGCAGAAGGAAATCAAGGGGACAAAGAAGAGGGCGATCGATCCTCTTTAAAAGTATCCGAAATACTTGAAAAGGAAGCAGAGTCGTCATTGAGGCCATTAATGGAGTTTGGAGAAGTTTTAGACGAGTCCGTTACCTTTTCGAAGTGCCCAGTTAGATTGCTTGCAAGTGATGATCGAGTAGTTGTTCCAGAGTGCTCACTCAAGTTGTTTAACGGCCATGATGAGAATATTTTGGAATGCTCCCTAAGATTGTGTAAAGACTATGAAGAAGTTATTTCAGTGTGCTCGCTAGGATTATGTAAAAGTTATGAGGAAGATGCTTCTGAGTGCTCGCTAAGATTGTCTGAAGGAGAGAAAGATGTTTCTGATTGTGTGTTGAGATTGTCTGAAGGCAAAGGTGATAATGATATTTGGGAGTCCTCGTTAATGCTTTGTGAAGCTCATGGAGGTGATGCCTCTGAATGTTCATCGCAATTATCTGAAGGTGAAGATGATGTCTCGGAGTGTTCGTTGGTATTTTCTGAGGGCCATGAAAATAATATTTTTGAGGTTTCTGTAAGATTATTTGAAGATGAAGTTGAAGATGATGATGAGTTTTTAGTAAGGGTCTTTTCCAAGGGTATTTCAGCACCCGAGGATTGTGGATTAGCAGGTTTTGGCATCTCTGGAATTGGAGTGATTATGGAAAAGCCTCATGGGGTTCCTTTTCTCCGAGTGCAGAAAAAGCTGGATTTCTTTGTGGAGGAATTGATAGCTGAGCACTTAGCTTTGATGGATGGCCTTCTTGAGGCCTTGCGAAATGGATACAGTAAGGTCTTAGCATTTACAGATTCTAACAAAGTTTATCGTTTGATTGCCAGAAGTGATACAGTTGAAGATCAGCTGTTGATGGCTTTACGAGAAAGAATTCAAGAACTTACTGATAAATTTGAGTCATTTGTTCTAAGATTGGTCCCTGGATCTGAGCTTAAGAGGCCATTGCAGCTGGCTCAAGAAGCAATTGGAGTTCTCTGCGAGTTGATGGAGTGCTCTACCTGTGGCGAGGATAAGCATCTATCTAAAATGATAGAGATGAATTGCTCCCATAAAGTTTGTTTTGATTGCATGTGTATCTATGTCAAAAATAAAGTGCGAGGCTCACACGTCCCAGTAAAGTGCCCACAAGTGAGGTGTGATAATTACATGTCAAGCAATGTATGTAGATCCTTGCTTTCAGCTGCTTCATTTGAAGGAGTAATTACAGAAACTGAGGCAATAAACTTGAGATTTTACTGCCCTTTTCCTGATTGCTCAATGATGCTTCATGCCCAAACTCTATTAATTCAATCCAGTGTACATTGCATTGAGTGCCCAGAATGCTGTAGGCTTGTCTGCTCTAGATGTCAGATCCCATGGCATTCTTCATTGAGTTGTGAGGAGTATCAAAATTTAACTATAGATGAGACAAGTATTGGACATATCACTTTGCATCAATTAGAAGAGCATAGTAGCTGGAGGCGCTGTCCGCAATGCAGACAAATGATTGAGCTTGCAGAAGGATGCTACCATGTTACCTGCTGGTGCAGCACTGAGTTTTGCTTCGCCTGCGGTGCGGAGTACAGAGACGGGGCCCGGACGTGCAGATGCGAACCCCGTGACGAGGATGCCGGGCGGTCCCCGGCCCCGTCGTCGCAGGGAGAGACAGAGCACTGGAGATGGGATTGCTTCAATCCTCTTCCGTCAAGCGTTGACGGCTACACAGAGCAGGAGAAGACTCAGCTGGCGCTGATCCAAAGATTTCTTGCTGGGGGTGCCATCGACATCGAGTGCCAGAGCCCGTGCCAGTCTCCTTCCCGGTCTCCCGACGGCTCATCGTACCTCGACGACGCCATCAAGGACCTCAACCAGCTTCCTTGGCTTGAGAGCTTCATTTCAGTCATCGGCGATAGCTACCAGGAAGACCACATCTACTAAAAGGCCTCGCTCCTTAGAAATTGTGTTTTTTTACTGAACAAAGTGCCTCATTTTCCTTGGGTGAAGTTGACAAAGAGTGTAGATTTTTTTTGCTTTTTTATTCTTTTTCCATTGATGTTGAGAGCATTGGGTGGAATTAGAAGAACTTTTGAAGTTATATGTGCTGATTTTATTATATACTCGAAAAAAATTCTATGCATATTGTACTGTATATATTACATACATATATATTATGCATGATATGAGTATGTATAATATGGTTAAATTGTAGTGACATGTTATAAATATATGCAGTGTTTGATGATATAC

Network for GWHGAAEX013598

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13456.5	RVT_3	262	364	3.10E-13
PF01485.20	IBR	464	513	3.00E-06
PF01485.20	IBR	532	582	1.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.350
SRP064423	SRR2545915	Juvenile tuber	42.520
SRP108465	SRR5643513	five period of Gastrodia elata	28.530
	SRR5643514	five period of Gastrodia elata	31.200
	SRR5643515	five period of Gastrodia elata	25.950
	SRR5643524	five period of Gastrodia elata	30.390
	SRR5643525	five period of Gastrodia elata	44.260
	SRR5643528	five period of Gastrodia elata	36.900
	SRR5643658	five period of Gastrodia elata	44.270
	SRR5643659	five period of Gastrodia elata	28.540
	SRR5643660	five period of Gastrodia elata	28.410
	SRR5643661	five period of Gastrodia elata	26.110
	SRR5643662	five period of Gastrodia elata	33.700
	SRR5643663	five period of Gastrodia elata	29.730
	SRR5643664	five period of Gastrodia elata	33.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.960
SRP279888	Gastro	Gastrodia elata tuber	41.02
	Juven	Juvenile tuber	35.00
	Mother_Gastro	Mother tuber of Gastrodia elata	33.52
	Mother_Juven	Mother tuber of Juvenile	34.78