Gene detail

Detail information of GWHGAAEX013603/evm.TU.scaffold_50.232

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557693520\|ref\|YP_008796574.1\|	2.00E-93	AAA family ATPase [Candidatus Caldiarchaeum subterraneum]
KOG	KOG0735	0	AAA+-type ATPase
nr	gi\|743855787\|ref\|XP_010941607.1\|	0	PREDICTED: peroxisome biogenesis protein 1 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9FNP1\|PEX1_ARATH	0	Peroxisome biogenesis protein 1
trEMBL	tr\|M0RTC1\|M0RTC1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P18410_001}
TAIR	AT5G08470	0	peroxisome 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	5042449	5108138	+

Transcript Sequence
>GWHTAAEX013603 GGTTCTGGAAAATCTACATTTATTATGGCTATTGCTAAACATCTTGAAGATCATGAAGAAATCTTAGCCCATGTAACATTTGTTAGCTGTTCAAAACTTGCTCTTGAGAAGAGCCAAACAATTCGCCAAGCAGTTACAGATTACGTATCTGAAGCTCTAGTCCATCGTCCTTCCATTCTTGTTTTTGATGATCTTGATAGTATTGTCTCATTCTCATCTGATTCTGAGGGATCACAGACTTCCACTTCTGTCACTGCTTTGTCAAATTTTTTCATGGATATTTTGGATGAATTCAGGGAAAATAGTATGAACTCTTGTGGATGTGGCTGCGTTGCTTTCATTGCTTCTGCTCAGTCTCTTGGGAAACTACCTCATTTATTAACATCTTCAGGGCGGTTTGATTTCCATGTAGAACTGCCTGCTCCAGCTGTATCTGAAAGAGGAGCTATACTGAAGCATTTAATCATGAAACGTGACTTGCATTGTTCTGATGATGTAGTTTCTGAGATTGCCTCGAAGTGTGATGGTTTCGATGCATACGACTTGGAAATTTTGGTTGATCGTGCAGTGCTTGCTGCTATTAGTCATTCTTTAGTCTTCCATGATGAGGAACCTGAACATCCTGTTTTACTAAAGGATGACTTTTCTCATGCATTGATTGACTTTGTTCCAGTTGCCATGCGTGGGTTAACAAAGTCAGGTGCTGAAGGAAAATGCAATGGGTGGGAAGATATTGGTGGACTAAGCCACGTTCGAAGTGCCATTCAAGAGATGGTTGAATTACCTTCCAAATTCCCAAATATATTTTCTCAATCACCTTTGAGAATGAGATCAAATGTTTTATTGTATGGGCCTCCTGGTTGTGGAAAAACATACATTATAGGTGCTGCAGCAGCTGCTTGCTCTCTTAGATTTATCTCTGTTAAAGGTCCTGAACTACTTAACAAATACATTGGTGCTTCTGAGCAAGCTGTTCGGGATTTGTTCTCAAAAGCTGCTGCAGCAGCACCTTGCCTTCTGTTTTTTGACGAGTTTGATTCTATAGCACCAAAGAGGGGTCATGACAACACTGGTGTCACAGATCGTGTTGTTAATCAGCTACTGACTGAGTTAGATGGCGTGGAAGCATTAACAGGAGTTTTTGTTTTTGCTGCTACAAGTCGACCAGATTTGCTTGATGCTGCCCTTCTACGGCCTGGAAGACTTGATCGTCTTCTATTTTGCGATTTTCCATCTTGGCATGAGCGTTTGGAGATTCTCAAAGTTCTTTCTAGGAAGCTTCCTCTGGCTACAGATGTCAATTTGGAAGTGATAGCCTCAGTGACAGAAGGGTTTAGTGGGGCGGATCTCCAAGCTCTTCTGTCAGATGCTCAACTTGCTTCAGTTCATGAGCTCTTGGGCAGTGAAGCTGGCTATAGGCAGGGAAGAATTCCTATTATTAGCAGTGTGCTTTTGAAATCCGTTGCCTTAAAGGCAAGGCCCTCGGTTTCTGAAGCCGAGAAAAAGAGACTTTATGGGATTTACAGCCAATTCTTGGATTCAAAAAAGTCTGTAGCTACTCAGGTCTTTTATTCCTTTTTCTTGTTTTTCTAAGCTTTTTCTTTCTCAAACTTCCCTTCTGTTTTTCCTGTTTTTTTAGTTTGGGGTCTTTACATACATAGCACACCCAAGCTTTTATAGTATGCATATTCACCACCCAAACTTCAATTTTTACAAATAAAGCATTACTGTTTTACCAAATTTTAAATTATTTTAATTGCTAGTGGATATGAGGCGATATGCACTTTACATAATAGAACCTTTTTTAATAAATGCTTTATTCTAAATATTTACTAATTTAATAGACATAATGATTGAAGCGACTCACCTAACTAAATGTCCCATCAAAGTATTTCACTTCAATTTTCCTCTTTTGTGCAGTCCATAGAAGCCAAAGGCAAAAGAGCAACCCTCGCATAACTCTCTACTTTGGAGCCAATATCATTGTAGACAACTAACGGCAAGAAGTTACAGGTACTTGGCAGACTTCAAATGGATGCGCTGAGAAGGCACTTGGTGTCCTGGAGGTGGAGCATTGATAGGTACTGCTTGTAGATGAGGGTAATGAGAAGAGTAATGCTTTTTGTATTTTGAGTGGTGGGATGTATATATGAGATGTATAATATTGTGTACCACTCCTATGCTACCTCTTCCCTTTTGTTTGGTCTTTATTGTTCGTTTGAGTCATTTACAATTGCCCATTTATCCCAATGTAGCAATCACTATTTGGTAATTAATTTGATCTAACTTATATTCAAG

Network for GWHGAAEX013603

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	1	140	1.70E-11
PF00004.28	AAA	280	407	1.10E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13338	PEX1	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.520
SRP064423	SRR2545915	Juvenile tuber	9.700
SRP108465	SRR5643513	five period of Gastrodia elata	9.410
	SRR5643514	five period of Gastrodia elata	9.330
	SRR5643515	five period of Gastrodia elata	9.560
	SRR5643524	five period of Gastrodia elata	10.320
	SRR5643525	five period of Gastrodia elata	9.990
	SRR5643528	five period of Gastrodia elata	15.000
	SRR5643658	five period of Gastrodia elata	10.700
	SRR5643659	five period of Gastrodia elata	10.890
	SRR5643660	five period of Gastrodia elata	14.390
	SRR5643661	five period of Gastrodia elata	12.130
	SRR5643662	five period of Gastrodia elata	11.720
	SRR5643663	five period of Gastrodia elata	10.370
	SRR5643664	five period of Gastrodia elata	12.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.500
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.880
SRP279888	Gastro	Gastrodia elata tuber	12.44
	Juven	Juvenile tuber	16.21
	Mother_Gastro	Mother tuber of Gastrodia elata	18.64
	Mother_Juven	Mother tuber of Juvenile	21.54