Gene detail

Detail information of GWHGAAEX013606/evm.TU.scaffold_50.235

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343085920\|ref\|YP_004775215.1\|	1.00E-41	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
nr	gi\|743855781\|ref\|XP_010941603.1\|	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130 [Elaeis guineensis]
Swissprot	tr\|C0LGH2\|Y1561_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At1g56130 (Precursor)
trEMBL	tr\|F6H1S5\|F6H1S5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46144.1}
trEMBL	tr\|F6H1S5\|F6H1S5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46144.1}
TAIR	AT1G56130	0	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	5113936	5133302	-

Transcript Sequence
>GWHTAAEX013606 ATGGCGGCCCAAAAAATTTCACTTCGAAGTTGGAGCTTCTTTCTGTGCTTCCTTAGCTTCGAGAGATGCAGATGTCAGCTTCCCACCGCAAAAACAAACCCAATCGAAGCACTGGCGGTGAACACAATAATGGGCAGGTGGGGGCTGAAGGCATCGGGTTTATGGAACATCAGCGGCGAGCTATGTGACGGTATTGCCAGTGACTCCACAAATTTTGGCGATTTCAATCCTGCCATAAAATGTGATTGCTCCATCAACAATGGCACTGTCTGCATCGTAACCCAATTTAAAGTGAAAGCTCTTGATGTAATTGGCACATTTCCTGAGGAGCTTAGCAATCTCACTAATCTTTGGAATCTGGATTTAGGTCAGAACTACTTGACAGGGCCAGTGCCTGCTTTTATAGGAAACTTAAAACTACTGCAATACTTAAATTTTGGAGGCAATTCATTGTCCGGACCCATACCAAAAGAGATTGGGAATCTTAAAAGCCTTATTTCCTTAGGCATGACAGGAAACAATTTTAGTGGACCTATTCCATCAGAGCTTGGTGGTCTTACCAGTTTGCAGCAATGGTACATAAATAGTTGTGGGCTAAGTGGTGAGCTCCCACCTTCCCTATCCAATCTTACTAGCTTGCAGATATTATGGTTATCTGACAATAATTTTGTCGGCAAGATACCAGACTTCATTGGGACCTTAAAAAGCCTAAATGTTCTGAGGATACAGGGTAACTCTTTCATAGGCCCAATTCCATCAAGCTTTTCTAGTCTCTCCCAACTTACTGATTTACGCATTGGAGACATAATAAACGGGACTTCTTCATTGTCATTTATTAGTAATTTGACAACTTTAAGTATACTGATTTTAAGAAATTCTAAGATTTCTGATATTCTTCCATCAAACTTTGCAAAATATACAAATTTAATGAAATTGGATTTGAGCTTCAACAACATCACAGGCAATGTCCCACAGTCTCTTCTCAATTTGAGATCTCTAAAATTCTTATTCCTTGGGAACAATAGCATAACAGGAAACTTACCGGGAACAAAAAGCACAGCACTCAGCACTATAGATTTATCCTACAATCTTTTATCAGGGAGCTTTCCATCTTGGGTCACTGATCCGAACTTAGAAGTGAACTTGGTTGCGAACAACTTTGTCATAGACAGTTCTAATAGCAGTGTTTTGCCTTCAGGATTGGAGTGTCTTCAGAGAGACATTCCATGCTTCCGTGACTCACCAGTCTATTATAAGTTTGGAATAAAGTGTGGTGGAAATGAAAGCTTTACTGGTTCTGATGGAACTGTGTATGATGCTGATAATGCTTTTCTCACTACAGCATCTTATTTTGTGACTGATGCCAAAAAATGGGCAGTTAGCAACACTGGAAGCTTTGCAGATGCTTCAAACCCAAATACGAACTATATAATTAGTTCTCAGTCCCAATTTCAAAACACACTGGATTCAGAGCTTTTTCAGACTGCAAGGATGTCACCATCCTCATTAAGATACTATGGCTTGGGACTTGAAAATGGCGTTTATTTTATAAAGCTACAGTTTGCTGAGATTGGAATAATAGATCCACCTACTTATAAGAGTTTGGGAAGAAGGATTTTTGACATTTATATACAGGGTTCACTTGTGGAGAAAGACTTTGATATAAGAAAAGCAGCTGGTGATAAATCTTTTAAAGCAGTAGTGAGGGAATATCATGCCCGTGTAAGAAACAACTTTTTAGAAATACATTTCTTTTGGGCTGGAAAGGGCACATGTTGTACTCCAAGTCAAGGCTACTATGGTCCATCCATTTCTGCTTTAAGTGTATCTCCTTATGACTTTATTCCAACTGTGAGCAACAAGCCCCCAAATTCCTCGTCGTCAAGTAACAAAACAGGTCTAGTTGTAGGGGTTGTAGTTGGCGTTGTGGTGATGGGGTTAATCATTTTCATAATAGTAGTGTGGAGACGAATGCAAAAAAATATTAGTAAGGATGATGAAGAGTTGTTACGAATGCCCATCAGACCAAATACATTCAGCTATGCTGAATTGAGAACAGCAACTGAGGATTTCAACCAGTCTAATTTGCTGGGAGAGGGAGGATTTGGATCAGTATACAAGGGTAAACTATATGATGGAAAAATAGTTGCAGTTAAACAACTATCGGTAGCATCTCACCACGGGAAGAGTCAATTCATGGCAGAAATAGCGACTATATCGGCAGTGCAACACCGAAATCTAGTTAAATTGCATGGTTGCTGCCTTGAGGGTGATAGGAGGCTCTTGGTTTATGAGTACCTAGAAAATAAAAGCTTGGATCAAGCAATTTTTGGGAAGAACAATTTGCATATCGAGTGGGAAACACGCTTTGAGATTTGTCTAGGAGCAGCAAGAGGTCTGGCCTATCTTCACGAGGAATCGAGTGTGAGGATTGTTCACAGGGATGTAAAATCGAGCAACATTCTATTAGATGCCAATTTTTTCCCAAAGATATCGGATTTTGGCTTGGCGAAGCTCTACGATGACAAGAAGACTCACATAAGCACAAGAGTTGCTGGCACAATAGGCTATCTTGCGCCAGAATATGCTATGAGAGGGCATTTAACAGAGAAGGCTGATGTGTTTGCTTTTGGGGTTGTTGCTCTTGAAATTCTCAGTGGAAGGCCCAATGCAGACCCTGCCCTTGAAAGAGAGAAAGTTTACTTGCTTGACTGGGCATGGCGTTTATACGAGCAAAAGCTGGAACTAGACTTGGTGGATCCAAGTCTATCATCATATAATAGGGATGAAGCCGCCCGCGTATTTGGTGTCGCGCTTCTATGCATCCAGGCGTCGCCGGCGTTGCGGCCGCCGATGTCGAGGGTGGTGGCCATGTTGGCCGGAGACGGTGAAATTAACGAAGTCACCTCAAGACCTAGCTACCTCACAGAATGGGACTTTAAGGATATGAGCAGCACTTTTGAAAGTGATGATTTTTCGGGGTCAGCGGAGACGCAGCACACGCACAGCCAACCCAGCGCGCCGTCAGATTCAAGTACGGGAATTTACATAAGCAGCAACCCCTCTCCAGCTGCGCCTTTAGGGCATGATTCTACTGGAGAAGGAAGATGATCGCTCTTCCAAGGTAAAAATCAATATTTATGTTTTTTTTTTAGAAGATGAGATTTGAACCCATGGGACAATAAATTCGAAGCATTAATCGTTAGGCTAACACAATTCGCATATTTATTTAAGGAATTTATTACACTTACATTATTATATATATATTAAAATGAGGATATGTGACAATCCTATATATTTATATATAATTGATGCAATTTATTTTATTTGTATAGTCTTAAATTTTAAGGACTATATTGATAATTTAAAAATTATAGGGA

Network for GWHGAAEX013606

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.5	LRR_8	284	343	1.60E-08
PF11721.7	Malectin	420	607	2.10E-41
PF00069.24	Pkinase	692	890	5.80E-45

Protein Sequence

>GWHPAAEX013606
MAAQKISLRSWSFFLCFLSFERCRCQLPTAKTNPIEALAVNTIMGRWGLKASGLWNISGELCDGIASDSTNFGDFNPAIKCDCSINNGTVCIVTQFKVKALDVIGTFPEELSNLTNLWNLDLGQNYLTGPVPAFIGNLKLLQYLNFGGNSLSGPIPKEIGNLKSLISLGMTGNNFSGPIPSELGGLTSLQQWYINSCGLSGELPPSLSNLTSLQILWLSDNNFVGKIPDFIGTLKSLNVLRIQGNSFIGPIPSSFSSLSQLTDLRIGDIINGTSSLSFISNLTTLSILILRNSKISDILPSNFAKYTNLMKLDLSFNNITGNVPQSLLNLRSLKFLFLGNNSITGNLPGTKSTALSTIDLSYNLLSGSFPSWVTDPNLEVNLVANNFVIDSSNSSVLPSGLECLQRDIPCFRDSPVYYKFGIKCGGNESFTGSDGTVYDADNAFLTTASYFVTDAKKWAVSNTGSFADASNPNTNYIISSQSQFQNTLDSELFQTARMSPSSLRYYGLGLENGVYFIKLQFAEIGIIDPPTYKSLGRRIFDIYIQGSLVEKDFDIRKAAGDKSFKAVVREYHARVRNNFLEIHFFWAGKGTCCTPSQGYYGPSISALSVSPYDFIPTVSNKPPNSSSSSNKTGLVVGVVVGVVVMGLIIFIIVVWRRMQKNISKDDEELLRMPIRPNTFSYAELRTATEDFNQSNLLGEGGFGSVYKGKLYDGKIVAVKQLSVASHHGKSQFMAEIATISAVQHRNLVKLHGCCLEGDRRLLVYEYLENKSLDQAIFGKNNLHIEWETRFEICLGAARGLAYLHEESSVRIVHRDVKSSNILLDANFFPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFAFGVVALEILSGRPNADPALEREKVYLLDWAWRLYEQKLELDLVDPSLSSYNRDEAARVFGVALLCIQASPALRPPMSRVVAMLAGDGEINEVTSRPSYLTEWDFKDMSSTFESDDFSGSAETQHTHSQPSAPSDSSTGIYISSNPSPAAPLGHDSTGEGR

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005515	Molecular Function	protein binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	53.750
SRP064423	SRR2545915	Juvenile tuber	59.920
SRP108465	SRR5643513	five period of Gastrodia elata	49.620
	SRR5643514	five period of Gastrodia elata	48.400
	SRR5643515	five period of Gastrodia elata	46.680
	SRR5643524	five period of Gastrodia elata	61.000
	SRR5643525	five period of Gastrodia elata	32.530
	SRR5643528	five period of Gastrodia elata	29.980
	SRR5643658	five period of Gastrodia elata	25.540
	SRR5643659	five period of Gastrodia elata	41.060
	SRR5643660	five period of Gastrodia elata	41.900
	SRR5643661	five period of Gastrodia elata	31.800
	SRR5643662	five period of Gastrodia elata	34.570
	SRR5643663	five period of Gastrodia elata	38.300
	SRR5643664	five period of Gastrodia elata	34.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	66.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	66.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	67.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	68.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	71.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	85.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	66.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	55.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.560
SRP279888	Gastro	Gastrodia elata tuber	67.46
	Juven	Juvenile tuber	47.77
	Mother_Gastro	Mother tuber of Gastrodia elata	36.73
	Mother_Juven	Mother tuber of Juvenile	35.45