Gene detail

Detail information of GWHGAAEX013609/evm.TU.scaffold_50.238

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557693520\|ref\|YP_008796574.1\|	2.00E-85	AAA family ATPase [Candidatus Caldiarchaeum subterraneum]
KOG	KOG0736	0	Peroxisome assembly factor 2 containing the AAA+-type ATPase domain
nr	gi\|672180934\|ref\|XP_008810671.1\|	0	PREDICTED: peroxisome biogenesis protein 6 [Phoenix dactylifera]
Swissprot	tr\|Q8RY16\|PEX6_ARATH	0	Peroxisome biogenesis protein 6
trEMBL	tr\|M0T8K1\|M0T8K1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P20030_001}
TAIR	AT1G03000	0	peroxin 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	5269370	5319426	-

Transcript Sequence
>GWHTAAEX013609 ATTTATTTGGCCCTTGTCCGAAATCCGATACGCAGGCGACTCGTCCTTGCATTGGAGTAGTGTCGGAGGAACATGGTGGAGAGAAGGAAGCCTCTTATATTGTCTTCCACAAGAGTTCTCCTTGATTCTGTACTCTCTTCGGAAAATTCGTGTGCCGAAGGGAACGGTGAAAGAGTAATCGCTCGGAGCTTTCCGTCACTGCGTCTGACGGCTGGGATTCTCAGATTTTCCGGTGAAGGCGCAGGAGGAAGTGAACTTCATGAAAGTTCACATTTGGTTGGGGCCTCTTCTTTGGTGCTTAAAAGACTGTCCGTGACGTCTGGTTCACTGGTTCTGATAAAGAATGATGATACCCAAGTTGGAAGGCTTGTGAAAGTTTTAGCGCTTGATCCGCCTGTTATAGATGCAATACCAAGAGGGTACAATACTTCCTTAAAGTTTTCTTCGTCCCAGCATGTAATGCATGTTTTACCTTCTTTGGAGTATACTGCCAAAATCGATGTACCCTTTGATCTGGAAGTTGCATATGTCACCCCACTTTTAGCATTCAATCTTGGATTGCATGTTTCATCTCTTAAAGTTCTTCTTTATGGAGGTCAAGAATCTTTGAAATCTCTATTTGAGGTTGATGAGAAAGCAACCACAGAGGGAAAGAGGAATGAAAATGTAAATGTTGTTGTTGTTCCGTGGGCTCATTTGCCCAGTTACGCTTCACACCTAAGAGTTTCTTTTGTTAAGATGCCTAATTGTGGTATGCTTGAATCCCTCAAAGGAAATTCTAAAATTGAGGTTGATGATCACCAAGATATGATTGATTCAGCTTTGAATGATTACTTCAAGGTAGATAGGTATTTAACAAGAGGAGATGTTTTCTCTCTCCAATTAAGCTGGAGCTGCAATTCAGAGATGTGCACAGCTTGCGAAAAAAACTCTGCAAACCATTCATATAATTTTATCTACTTTAAGGTGGTGGCATTGGAACCACTGAGTGAGCCAACATTACGTGTTAACCGCAGCCATACAACTCTTGTTCTTGGAGGAAGTGTGGCATCTGCTGTTCTTCCAAATTTTTTATTTGAAAATTCTGTAGAGTGTATGCCCTTGCAGAGTGATACAGTTAAAATTTTGGCATCGATTATTGCACCTACCATATGCCCTACAGTGTTGTCATCAAAATTTAGAGTTGCCATACTCTTACATGGTCCTGCAGGGTGTGGAAAACGAACCGTTGTTAGATACATTGCTGGTTGGTTTGGGATGCATGTTGTGGAGTACAGTTGTCATGATCTTACTTCCTCCTCTGAGAACAAATCTGCTGCAGCACTTACTAATGCATTTAATACTGCTCGTAGGTATTCACCTTGCATACTACTTCTTCGCTTTTTTGATGTTCTTGGAAGCTTGTCTGGTAGTAATGGCTCTCCATTAGATCAAGTTGCTGTTTCTTCTGAAATTGCTTCAGTTATTCGTGATTTTACTGAGCCTCTGTATGAAGTTGGAAACTTGTATCCAAGGAAAATGGATGTTAATTGTTTGCATTTTATAAATCAGTATTTAGTGGAGCCTGAAAGAGTTAGCAGTCAGGGAGTCTTGTTTGTTGCAGCTGCGGACAGCATCGACAATCTGCAACCTGCCATTAGGCGATGCTTTAGCCATGAGATTAGTGTGGGTTCTCTGACTGAAGCACAGCGGTTGAAAATGCTGTTTCAAGCACTTAAAGGCGTTAATACTACAAATGATGAAAGTCAAGATTTATTGAAACACATAACTGGGCAGACAGCAGGGTTTATGCCAAGGGACATAAGTGCTTTAGTCGCTGATGCTAGTGCCAGCTTTATAACTAGAATACTAAATGACAATGTAGGTGCTGGCAGAATATATAATGCTAAAAGTGCAAACTGTTGCCCATTAGACAAGGACGATGGAGGCTTAGGTACAAGCTCACCTGAGCAATTGGGAGAAGAAGATTTTTCCAAAGCTTTAGAACGTTCTAGGAAACGAAATGCTTTTGTGCTTGGTACTCCAAAGGTGCCTAATGTAAAATGGGAAGATGTTGGTGGCCTTGAGGAGGTGAAGAGATCGATTCTTGACACTGTTCAGTTGCCTCTTATTCATAAGGATTTATTTTCATCTGGATTGCGCAAACGATCTGGTATTCTTCTTTATGGACCACCAGGAACAGGCAAGACACTGTTAGCCAAAGCTGTTGCAACTGAATGTTCCTTGAATTTTCTTAGTGTGAAAGGGCCAGAGTTGATTAACATGTACATAGGAGAATCTGAAAAAAATGTTCGAGATATATTCCAGAAGGCAAGGTCAGCGTGGCCTTGTGTCATTTTTTTTGATGAACTTGATTCTCTTGCTCCTGCCAGGGGAGCATCCGGCGATTCAGGTGGCGTTATGGATCGAGTTGTTTCTCAGATGCTTGCAGAGATTGATGGCATTAGCGATTCCAGTCAAGATTTATTTATTATTGGTGCAAGCAATAGACCTGATCTCATTGATCCAGCACTTTTACGACCGGGACGGTTTGACAAGCTTCTTTATGTTGGCGTGAATTCTGACTCTTCTTATAGGGAAAGGGTTCTGATAGCTTTGACCAGAAAATTCAAACTACATGATAGTGTATCTTTGCTTTCAATTGCTAAGAAATGCCCTCCAAATTTTACTGGTGCAGACATGTATGCTTTGTGTGCTGACGCTTGGTTTCATGCAGCAAAGAGGAAGGTTTCCCAGAATTGTTACGAAATGCCGAATGTGGAAGAAGAATCCGAATTGATTGCCGTCGATATGGATGATTTTATGAAGGTTTTGGGGGAGTTATCTCCGTCCCTGTCAATGCTAGAACTCAAGAGGTATGAACAGCTGAGGGATCAGTTTGAAGGCTCTTTGAATTAGCAGATCACCTTTTCGATAGCATAATGATCTTTTAATGGAGTCCACAAATATAATTGCAAGAACTAATCCCGAAGATACCCTTTTGGGAAGTTATTGTAAGATTATTGGGCAGCATGCTCTCTTTGAATCCTGGTTCTTTAAAGTCAAAATCTCAGAGTTTTCCAAGGAAAGCTTTCACATCGATGGTCCTATTTAATAATCTTCCAAATGGCATTTGATTCCATCGGTTTGCAGTAATTAAGTGATAATTAAGATGACAAACATGTTTATATTGTTTAATCCAAAATTAATGAATTTATTTTTCCAACCAATCAAACCAATGTGACAACGTTTTCTGGAAAGGGGGAGCGATCGACCGAAATAGTTATAGTGCAAAATCGAGACCTTGAGAGTGTGTGGGTGCAATATTAATGATTTGTATATTTGTTAATTATAAATGGATGCATACAATTGCCTTATTTTTTTATTTTTTTATATGATGTTTGAGACTAATTTTTTAGTTTTTGAGCTCAAGTTGACCTAG

Network for GWHGAAEX013609

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	373	532	9.20E-15
PF00004.28	AAA	695	827	6.80E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13339	PEX6, PXAAA1	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.150
SRP064423	SRR2545915	Juvenile tuber	12.360
SRP108465	SRR5643513	five period of Gastrodia elata	9.170
	SRR5643514	five period of Gastrodia elata	10.890
	SRR5643515	five period of Gastrodia elata	9.920
	SRR5643524	five period of Gastrodia elata	11.060
	SRR5643525	five period of Gastrodia elata	8.970
	SRR5643528	five period of Gastrodia elata	9.260
	SRR5643658	five period of Gastrodia elata	8.460
	SRR5643659	five period of Gastrodia elata	11.180
	SRR5643660	five period of Gastrodia elata	10.640
	SRR5643661	five period of Gastrodia elata	10.880
	SRR5643662	five period of Gastrodia elata	9.610
	SRR5643663	five period of Gastrodia elata	10.210
	SRR5643664	five period of Gastrodia elata	9.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.120
SRP279888	Gastro	Gastrodia elata tuber	12.52
	Juven	Juvenile tuber	13.70
	Mother_Gastro	Mother tuber of Gastrodia elata	33.75
	Mother_Juven	Mother tuber of Juvenile	20.02