Detail information of GWHGAAEX013619/evm.TU.scaffold_51.4_evm.TU.scaffold_51.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|92118967|ref|YP_578696.1| | 2.00E-26 | tRNA(Ile)-lysidine synthetase-like protein [Nitrobacter hamburgensis X14] |
| nr | gi|672142382|ref|XP_008795051.1| | 0 | PREDICTED: uncharacterized protein LOC103710905 [Phoenix dactylifera] |
| Swissprot | tr|Q8M9Y1|TILS_CHAGL | 2.00E-13 | tRNA(Ile)-lysidine synthase, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01161} |
| trEMBL | tr|M0TGH6|M0TGH6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P10880_001} |
| TAIR | AT3G24560 | 0 | Adenine nucleotide alpha hydrolases-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000057 | 108606 | 176572 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013619
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01171.19 | ATP_bind_3 | 51 | 255 | 8.50E-51 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008033 | Biological Process | tRNA processing |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0016879 | Molecular Function | ligase activity, forming carbon-nitrogen bonds |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.910 |
| SRR2545915 | Juvenile tuber | 4.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.750 |
| SRR5643514 | five period of Gastrodia elata | 2.800 | |
| SRR5643515 | five period of Gastrodia elata | 3.440 | |
| SRR5643524 | five period of Gastrodia elata | 3.500 | |
| SRR5643525 | five period of Gastrodia elata | 3.140 | |
| SRR5643528 | five period of Gastrodia elata | 2.860 | |
| SRR5643658 | five period of Gastrodia elata | 3.380 | |
| SRR5643659 | five period of Gastrodia elata | 4.150 | |
| SRR5643660 | five period of Gastrodia elata | 5.550 | |
| SRR5643661 | five period of Gastrodia elata | 4.410 | |
| SRR5643662 | five period of Gastrodia elata | 4.230 | |
| SRR5643663 | five period of Gastrodia elata | 4.620 | |
| SRR5643664 | five period of Gastrodia elata | 6.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.900 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.30 |
| Juven | Juvenile tuber | 8.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.49 | |
| Mother_Juven | Mother tuber of Juvenile | 8.68 |