Gene detail

Detail information of GWHGAAEX013629/evm.TU.scaffold_51.24

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743775172\|ref\|XP_010917964.1\|	PREDICTED: uncharacterized protein LOC105042442 isoform X2 [Elaeis guineensis]
trEMBL	tr\|M0S1R6\|M0S1R6_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P21080_001}
TAIR	AT3G24880	Helicase/SANT-associated, DNA binding protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000057	1190439	1247033	+

Transcript Sequence
>GWHTAAEX013629 GCCTGCGATTGTTCTTCCTATACTCCGCGTTAGGTTTTATTTTTTCTTCGACTGCACCAACGCCGTCGCCGACGCCGACGCCGACGCCGACGCCGTTTTTTCTTCGTTTAGAAAATCGCCTTCCTTCGCTGCAATCTAAATCTTTAATTCCCGTGATCTACCTTTGGAACTCGTAAATCGCGGATTTAACGCGATTTCTGGGATTTATCGGGTAACGGGATTTAAGTGACAGGGACTTGCGGTGAAGTTAAATCGCTGTTTGGAAGATTTAAGGGATTTGAAGTCGTTAAATCCTTTTTACCAAACAGGCCCTTGGGTTTCGAGTCTCCTGTTATTGCGGTTTCTTTATTATTGCTGTTCTCGCAGTTCCCCCTACACTCCAGAAATCCACATTTGTCTTGCCGTTTGATGCAACCCAGTTAAGCATTTTTACTGTTGATTGCGAGTAGAGTGGTAGGTCATCGCCTGAGGCAGTGTCCTAATAGGGCGCCGGGCGGTAGGGTTTCCAAACCCTTTTTCCCCTCGTTGATCGCCTACATTCCAGGTTGTTCGTTCCCGCTTTCCAAGCTCATAAAATCACTACTTCGCCTGATTTGGTTCTCATATTCATAAAATTTTGAGCCGATCCTGACCTACATTGGAAATTCTTTTGCATCCTTGCCACTCCACATTTGCTCCATCATCATCTTCCTCGGCGAGCTCTCTTTGTCAGTGATTTCTTTTCTCGGAGGGGGTCCCCTTGTTCAAGGTTTAATGTTGAAAAGTTAGTACAATAGTTATGCATGGATGCAGATCAGTATTTACCCTCTTGGTGAATGCAGAGGTTGATTCTATGGGTGGTATTGTTGATTGTGAAGTTGGTTTAGATACCAAATCTTCACCCCATCGGGCAGCAATCACAAAGGCACAGGAGGAACTACGGTTGGAATATGATGTGCGCGAAGAAAGAAGAAGGGAGCTGGAGTTTCTGGAAAAGGGCGGTAATCCTCTGGATTATAAATTTTGTCGAGCAACTTCAATCAGCGTACAATCTACTTCTCACCGGGATCAGCTTGCTGAGCACTATGTGATAAGTGAAGCGAAAGGTAGTTTTGCATTGGCTACATCTCCTCATGGAGATTCTGTTGAAAGCAGTGATCGGCCTGCAGGTTCTATGGGCCGGGAGCCGAACATTGCAGACAATCTCCTACTACTTTCTGGAGAACATAGTAGTAGCCCGGGCAGAGAGAAAATTGTGAGAAGAACTGGGAGAAGAAGTAATACTGCTCTGGTAGAACAATCTTCCAAGATTGATAGTTACCGAAATTCAAAAGAATCAAATGATTTGGTGATTTTTCGTCTTGGACCTAGAGGGCAGGCCTATGCGCGAAGGAATAGATCTAGATCAAGTCGTGACAGTCACAGCAATAAATCTCCTCTTTTAGCTTCCTCTCGTTCTGATGCTAGGGATGTAAAGGAGTCACATGAGGAAGCACATACCGAGGAGCATACTGTTTCATCAATCATTGACTCAAAACCTACAAGTCCTAACATTAAGATTGTTCAAAAAGGCTTGGCTTTCAAAGATCAATTAAATATGGAAATTGATGGTGGGTTGGTGCAGCATGCACCAACTGGTACAGTAAAGAAAGAATTGCAGGTAGCAGAATTTGACACTTGTGAAATCATGAAAGGTGTTGATCATAATGGTACTTCTGTTGAAAAAGAGGCTGCAAATAGTCCTATGCAAACATCTGATGTGATCATGAAAGAGTCAATTGCTTGTGTTGGTTTTGTTTCTGCTCCTCCATGCGCTGGGGATAACATTAAAGGCTCTAGCCTTGATGAGAACAATATGAATGAACATGAGGCTCGTTTCCCTGGAGGTGCTGATAACAATGATTTGCTGGCATTTAGAGATGGCGGTATTGTAGGTTCTGTTGCCTTTATTACTAGTAATGGTGAGGCAAGAACTTCTAAGATAAAGTCGAACTCAGATCAGGTTAAAGATGAAGAGCAATTATGTTTTCACAATAGCGAGCAAGCTTTAGATAGATCCTTGAACAATGAGATTGCAGTAAAGAAGTCTGACGTTTCTCAGGATGATGGTAGCCATGGAAATAAGGCTAACATGAAAATAGGCAGTTCTATTTTTCACAATCATGAGCCTTCATCTGCAATCTATTCTAAGAAGGATTCCTCAACTGTTTCTGAACCTCAGAATAGTGAAGCTAACAAGCTGAAGTTGGCAAAAATGGCACATGAGGATGCCATTTTGAAAGAGGCTCGGATAATTGAGGCAAACTTAAAGAGGGCTGGTGCACCATCTATTGGTTGCATATCTTTAGAGAATCAGGAAAAACTGCATTGGCATTTTGTACTCGAAGAGATGGCTTGGATGGCAAATGATTTTATGCAGGAGCGACTTTGGAAGAAAACTTCTGCTGCCCAACTATGTCACTTGATTGCCTCTGTTGGTAGATCAAAATTTGAGCAACAAAATTTGTGTCGGAAGCAGAGAAATGTGGCAAGAACTTTGGCTAAAGCTGTAATGAATTTTTGGAATTCTGTTGGTGCCAGTCTTTGTAAAGGTGAAGCATCCTCTGACATGATGGAAGAGTGTGATGCGAACCTGCTTAAAGCATCAAATTTCAGCAACTTCAATTCTACAAAATATCAGAATTTAGAAGCTTGTGGAGGGAATCGTAAGCCAGGTATTCAGAGATATGCCTGTAGGCTCTTGCACTATCTCTCTAATACATCTTGTGATCCTATTCTTGCTGAAGCACCAAGAACTCCCGATAGGTTAAAGGATGCTGGTTCATTTGGAGTTTTTTGGGATGACCAACTTTCAGAAGAAAGCTTGTTCTATAAAGTACTTCCTGGTTCCATGCACTTGTACAGAGAATTGATACAGTCTCAATGTACACATATCAAGGAAGAAGAATGTGAGGCCTCAATGTGTAATTCTGTTACAGATGGGACTCGAAGAATTATTTTTGAAGAGGATGAAGGTGAAACAGGAGATGACATTTTTCCAAGAGCGTTTGATGGGAAATTTTCATCCAGGTTTATTCACAAGAAGAGAAAAAGCCATCAACTGAAGTCATATTCTAACCGATATGAAGTTGGTGCTGACTCATCGTACAATCCTTACCTTGATGGAAAATCTGCAAGTCATTCATTTGTTATTATGGGGAAAAGACCTGGCATCCTAAATGCTAGTGCTGTGCCAACAAAACGCACACGGACGGCTGCAAGACAACGTTTTATTAGCCCTGGACATACTGGATTCCTTCCAGTGACAAGCAAAACAGATGTTTCAAGTGGTGATACAGCTTCATTCCATGATGACCAAAGCTCACGACATGGCTGCTCACAACCTCAGAAAAATTTTGAAGTAGATTCTACGGTAGATTTTGAGAGGATGCTGCCATTTGATAGCAGTGATATTCCCATGAAACCCAAAAAGAAGAAGAAACCGAAGCACTTGGGATACAAAAATTCGCTGAACCTTCCTAATTCCAAGGCCTCTTCTTATGAACAGAGATTACAGGCTGATTATATGGTTCGACAAGATCAGAGAGATTCTGCTAAAAAGAGATGTGATGGTCAGCAGTTTGAATCTAATGGAAACACTGCATTTTATGGGTACAATGTTCCAAAAAAACCTAAGCCCTCAAAGCGTGCAGAGTCTCCAGAAACATTTACACCTGCTGGTGGGTCCATGCCCTCTCCAGTTGCTTCTCAGATGAGTAACATGTCAAATTCAAATAAGCTTATCAGGATAATCACCAATCGTGATAGAGGCAGAAAGAGTAAAGGTCTAAAGTTGGCTTACGGACAGTCTGGACCTGGAAATGCGTGGTCAACCTTTGAGGACCAGGCTCTCGTTGTCCTTGTTCATGATATGGGCCTTAACTGGGAGTTGGTCAGTGATGCTCTCAACAGCACTCTTCATTTTAAGTGTATATACAGGAAACCCATAGATTGCAAGGAACGTCACAAGTTTCTTATGGATAAAAGTGCTGGTGATGGAGCTGACAGTGCTGAAGATTCAGGCTCATCTCAGCCTTACCCATCCACTTTGCCAGGAATTCCAAAGGGCAGTGCCAGACAATTGTTTCAGCGACTTCAAGGACCAATGGAGGAGGATATCATGAAGTCACACTTTGAAAAAATCATTCTCATTGGGCGGCGCTTGCATTCTTGTATAGCTCAGGATAATAAACATCAACTGAAGCAATTAACTCCAGCTCACAGTTCTCATGTTTTGGCTCTATCACAAGCATGCCCAAACAACTTATCTGGACCATTCTTATCGCCAATTGATCTTGCTGATGCTGTTAATTCAAACACTGATGTTGTTGGCCTTGGTTATCAAGGTTCTCATTCGAATGGCATTGCAATTTCAAGTCATCAGGGTTCCTTGACACCAGTTCTTCCAACATCATCTACAAATGCCATGCTACAGGGAACATCTAGTACTGTTTTAGGAAGTGGTCTATCTACTTCATCTCCACCAGTGCATGCGCCACCAAGGGATGCACAGAGATACAATGTGCTTAGATCTAATACCTTACCAATTGATGATCAAAAAAGGCTTCAGCAGTATAGCCAAAACTTTTCTGGCAGAAACCTGCAGCAATCTGGTATATCTATGGCCAGTGCTTTACCTGCTGCGGTTGATCGTGGTGTACGCATGTTACCTAGTGGTAATGGCATGGGTATGTTGTGTGGGGTCAACAGAAGTATGTCAATGCCCAGATCCGGTTTTCAAGGAGTTAGTCCGGCAGGCATGCTTAACATGGTTTCCTCTAACAGTACACCCTCTAGCAATGGTGTTGGAATGCCTAACTCTATGGGGACCCATTCTAATGCGGTTTCCAGTTCAGGAAACACATTGGCTAGACCGCGTGATGCTTTACAAATGCTTCGACCTGGTCATGCTACCGATGAGCATAGACAGATCATGCTGCAAGAAATTCAGCTGCAAACATCGCAAGGGAATGCTCAATCTATTTCCTCTTTCAGTTCCCCATTTTCCAATGCACCAGCTTCTCCACAAGTTCAGACGGTCCCGGTGCAACAACACCAGCCACATCAGATTCCTCAGCAGCCTCATGTTCTTGGGAATCCTAATAATCATTCAAGTGCACAACAGCAGGCATATATCCGCTTTGCTAAAGAGAGTCAACTCCAACAACGGATTATGCCTCAGGCCCAGCATCCTTATTCTGGTTCTTCTACCATTTCTCCTCTACAAAGCAATTCTCAATTCCAACAGCAAAGCCAGTCATCTTCACCTGTAAATTCCATTGCTTCATCCCAGCCACAGCAGAAGCAGCCATCGATACCTCGCAATCTTCAAACTAGCAGTATGATATCAAACCAGGTGATGAAACAAAGACAAAGGCAACATGCTCAACAACAGCAGCAGCAACAGCAACCAAGGAATCTTCAGCAGCAAAAACAACACCCACAACAGCCACAGCAGCAGCCTAAATTTATGAAGAGTTTGGGTCGGGGGACTATGTTGATACGTCAAAACCTAACGGTTGATGCCACTCAAGTTGGTGGCCGTCCATCAGGTCCTAATAGCCAAGGTTCTGAGAAACTTTTGGTACAACAAAGTCAAGGTTTTAATGCTGTTAGTACGGGATTAAATTCAAATCTGCAACAACCTTCAATTTCCCAGAAACTGTATTCCCGTCCTCACCCCCCTCAGACAAAGCAAATTCCACCTATACCTTCCCATTCTGATAGCAATCAAGCTACAATACTGCCTCCTCCAACTCATGGACGTATAGCACAGCAACCTGGGCTAGCAACACCTCCAATTACCCAGCAGCAGCGACAGGCAAATCAATCACCAACAAACTTGCCAAGAATAATTCTTCCACAGAGCCGTCAGTCTAGCCATGATGGCAGAATACAGTGTATTAATGAAACAGTTCAAGTTAACCAAATGGTTCCCTCACCATCACTTCCTAAAATTTCAGATTCTTCTAGTGTGCCTTGTGCCATTTCATCTGGGGGTCACTGGAAGTCAGAATCATCCTTTGAAACATGCACAAAAGGTGAAAAACCTCAATCGACTGCTGTTTCACAGGAAAATTTTTCTGTTAATGAAGCAATTATACCGCCTTCTTCCCAAGGTTTAGTACAGAGGCAGTTATCTGGCACTATCTCTGGGCATGGACATGGAGTTGGGGGTCAATGGCAACAACAACAATTGCAACCAACGTCTCTACCTCAGCAGCAGCATCGGCAAGGTGTACAAGGAAACTTATACACACGGTCTTCAAATGCTGGATCATGATGATCGTGAATGATTGGTAGGACCCTGCAACATTAAGCTGCGTGACCAATTCTTGTAGAAGTATTGTACAGTGATACCAGGAAATTCAGCGTTGTTCGATGTCTTAGCTTGGAGGATCAGGTGCTAGCAACTTCATCTCTTAATTTAAAGATGGATTGCGTCACATTAATCTTCTCCTAGCTCCTACCGTCAGCTCCTCTCTTTTTCTAGTCACCCATGAAATTACCAAACCAAATTCTTTTGTAATTTGAACTATTGCTGAATTTTGGGTTTGTTAGATTTTTTTCTTTGCCAGTGGCAGGGAAAAAGCGCTCAAAGTTTCTGAGAAAGCTGGCCATTTCGCATAGTTCTAAGGTTTTGTACATGCTCACCATCCGTTAGTCTTATAATGGAAATATTGTATAGTGAAACATGTATCATTAATATCCTGCTAGAAATGAGTATATATGCATAATGCTAAGCGGGGCAGTGTTGCCGGAATGGCATAACAGGTCTCTCTCTCCCTCTCTTTTCCTCCCTAGCATGCTTGCCATCCTCACAGCTCTGGTGTGTTTATTTATCGTTAATGGGTAAGTGAGCGGAATACGGTCGCTTTGGCTCTTTTTTTACTTAATTTTTCTGTAAGGTGCTAGAAAGGTTTATTATGGCTAAATTGTTTCACTCAGCTGCAGGTTTTTGTTACAATTTGTTTTTGCAGCAAGCTTCTCTTAAAAATATGGTGGAGTATTTGTGCAAAGATTTTTTTTTTTTTTTTT

Network for GWHGAAEX013629

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07529.12	HSA	517	558	4.60E-07

Protein Sequence

>GWHPAAEX013629
MHGCRSVFTLLVNAEVDSMGGIVDCEVGLDTKSSPHRAAITKAQEELRLEYDVREERRRELEFLEKGGNPLDYKFCRATSISVQSTSHRDQLAEHYVISEAKGSFALATSPHGDSVESSDRPAGSMGREPNIADNLLLLSGEHSSSPGREKIVRRTGRRSNTALVEQSSKIDSYRNSKESNDLVIFRLGPRGQAYARRNRSRSSRDSHSNKSPLLASSRSDARDVKESHEEAHTEEHTVSSIIDSKPTSPNIKIVQKGLAFKDQLNMEIDGGLVQHAPTGTVKKELQVAEFDTCEIMKGVDHNGTSVEKEAANSPMQTSDVIMKESIACVGFVSAPPCAGDNIKGSSLDENNMNEHEARFPGGADNNDLLAFRDGGIVGSVAFITSNGEARTSKIKSNSDQVKDEEQLCFHNSEQALDRSLNNEIAVKKSDVSQDDGSHGNKANMKIGSSIFHNHEPSSAIYSKKDSSTVSEPQNSEANKLKLAKMAHEDAILKEARIIEANLKRAGAPSIGCISLENQEKLHWHFVLEEMAWMANDFMQERLWKKTSAAQLCHLIASVGRSKFEQQNLCRKQRNVARTLAKAVMNFWNSVGASLCKGEASSDMMEECDANLLKASNFSNFNSTKYQNLEACGGNRKPGIQRYACRLLHYLSNTSCDPILAEAPRTPDRLKDAGSFGVFWDDQLSEESLFYKVLPGSMHLYRELIQSQCTHIKEEECEASMCNSVTDGTRRIIFEEDEGETGDDIFPRAFDGKFSSRFIHKKRKSHQLKSYSNRYEVGADSSYNPYLDGKSASHSFVIMGKRPGILNASAVPTKRTRTAARQRFISPGHTGFLPVTSKTDVSSGDTASFHDDQSSRHGCSQPQKNFEVDSTVDFERMLPFDSSDIPMKPKKKKKPKHLGYKNSLNLPNSKASSYEQRLQADYMVRQDQRDSAKKRCDGQQFESNGNTAFYGYNVPKKPKPSKRAESPETFTPAGGSMPSPVASQMSNMSNSNKLIRIITNRDRGRKSKGLKLAYGQSGPGNAWSTFEDQALVVLVHDMGLNWELVSDALNSTLHFKCIYRKPIDCKERHKFLMDKSAGDGADSAEDSGSSQPYPSTLPGIPKGSARQLFQRLQGPMEEDIMKSHFEKIILIGRRLHSCIAQDNKHQLKQLTPAHSSHVLALSQACPNNLSGPFLSPIDLADAVNSNTDVVGLGYQGSHSNGIAISSHQGSLTPVLPTSSTNAMLQGTSSTVLGSGLSTSSPPVHAPPRDAQRYNVLRSNTLPIDDQKRLQQYSQNFSGRNLQQSGISMASALPAAVDRGVRMLPSGNGMGMLCGVNRSMSMPRSGFQGVSPAGMLNMVSSNSTPSSNGVGMPNSMGTHSNAVSSSGNTLARPRDALQMLRPGHATDEHRQIMLQEIQLQTSQGNAQSISSFSSPFSNAPASPQVQTVPVQQHQPHQIPQQPHVLGNPNNHSSAQQQAYIRFAKESQLQQRIMPQAQHPYSGSSTISPLQSNSQFQQQSQSSSPVNSIASSQPQQKQPSIPRNLQTSSMISNQVMKQRQRQHAQQQQQQQQPRNLQQQKQHPQQPQQQPKFMKSLGRGTMLIRQNLTVDATQVGGRPSGPNSQGSEKLLVQQSQGFNAVSTGLNSNLQQPSISQKLYSRPHPPQTKQIPPIPSHSDSNQATILPPPTHGRIAQQPGLATPPITQQQRQANQSPTNLPRIILPQSRQSSHDGRIQCINETVQVNQMVPSPSLPKISDSSSVPCAISSGGHWKSESSFETCTKGEKPQSTAVSQENFSVNEAIIPPSSQGLVQRQLSGTISGHGHGVGGQWQQQQLQPTSLPQQQHRQGVQGNLYTRSSNAGS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.050
SRP064423	SRR2545915	Juvenile tuber	12.920
SRP108465	SRR5643513	five period of Gastrodia elata	8.170
	SRR5643514	five period of Gastrodia elata	9.390
	SRR5643515	five period of Gastrodia elata	9.370
	SRR5643524	five period of Gastrodia elata	9.150
	SRR5643525	five period of Gastrodia elata	12.520
	SRR5643528	five period of Gastrodia elata	9.800
	SRR5643658	five period of Gastrodia elata	11.280
	SRR5643659	five period of Gastrodia elata	9.180
	SRR5643660	five period of Gastrodia elata	9.710
	SRR5643661	five period of Gastrodia elata	9.420
	SRR5643662	five period of Gastrodia elata	8.240
	SRR5643663	five period of Gastrodia elata	9.490
	SRR5643664	five period of Gastrodia elata	9.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.990
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.790
SRP279888	Gastro	Gastrodia elata tuber	10.78
	Juven	Juvenile tuber	13.72
	Mother_Gastro	Mother tuber of Gastrodia elata	14.14
	Mother_Juven	Mother tuber of Juvenile	17.00