Gene detail

Detail information of GWHGAAEX013637/evm.TU.scaffold_51.35

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4308	LRR-containing protein
nr	gi\|743871663\|ref\|XP_010906357.1\|	PREDICTED: protein TORNADO 1 [Elaeis guineensis]
Swissprot	tr\|Q9FJ57\|TRN1_ARATH	Protein TORNADO 1
trEMBL	tr\|V4UT67\|V4UT67_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR65746.1}
TAIR	AT5G55540	tornado 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000057	1818349	1858602	+

Transcript Sequence
>GWHTAAEX013637 AAAGGAAGCACAATCAACTATTTTACCTACACCAGACTTGTCAATGAGTAATCAATTCTCACCTGACCAAGATCTCGATTGGGTGCTGCAGGCAATTATTTCTGGTAAGATGAACCTTCAAAACATTTCCGTCTTCAATTCTCATTCAGCTTTTAGCTACCATCAAGATTCAGAAAACTCCTTATGCATCAACATCTCCTCAGAGGACAACATTCAAGAATTGAGCAAAATTTTAACTGCTCTCACAGCACAGGAAAGTGTCTGCAATACTACAAACACGGCCTTTCATTCTATAAATTGGGAGATGAAGATGCTTGATGGCCTTTCTTCATTACTCGATAACAATGCGAGCATCAAACACGTTGAGTTCCAAAAGAACATTTTCAGCACCGAGGGAATGTCTGTGCTTTCGGACATCTTGGGAAGAAATAAGAAAATTAGGAGTATTATATTCTCAGAGTGCCAGATTGAGAGAATAGGAGCTACCTTGTTAGCCTCTGCTCTGATGAAAAATGATACCCTGGAAGAACTACAGATATGGGAGGATTCTATTGGTTCAAATGGTGCTGAAGAATTATCAAGAATGATTGAGGTGAACTCAACACTAAAACTACTATTGATACTGGATAAACATTTCACTACTGCAGCTCCTATAATCTCAGCCGTGCTGGCGAGGAACTGCAACCTAGAAGTCCATCTTTGGAGCAAAGATGAAACAGGTAAAAATGTTAAAATAGTTGAGTTCAGACCAGAGGCGAGCACACTGAGAATTTACAAACTAAACTCTCAGGGTTCTCAGAGGGTGACCTGTGCATTAGGTTTGAATACAACAATAAAGACACTAGACATGACTGGCATTCAGCTGAATTCAAAATGGGCCAAGGAATTTAGACAGGTTCTGGAGCAAAATCGAAGCCTCAAAGAAGCTAAGCTAACAAGAACCGGCCTTGGAGACAAGGCAGCAGTGTACATAGCAGCTGGATTATTCAAGAACAATTCCTTGGAAAGTATAGCATTGGATGGAAACAGATTCGGGGGTGTTGGAGTGGAGCATCTACTGTGCCCCATGAGTAGGTTTTCTCTATCACAAAACCAAGCAAATACTACACTGAGATATGTGGCATTTGGAGGAAGAGAGACAAGGATAGGAAGAGGAGGTCTCATGGCTATTTTGCGAATGTTGGACACAAATAAAACTATTATTCAACTCAGCATTAGTGAGGATGTGAGCATGAAACCTGAAGATGTGGTGAGAATTTTCAAGGGCTTGGAGAAGAATGATACTTTGAGATCTCTGTCACTGAGAGGGTGTAAAGGGGTAAATGGAGAATTGGTGCTACAGTCTATAATGGCTACTCTTCAGGTAAATCCATGGATAGAGGAGATAGATCTCACTGGTACACCGCTGCAAATTGCAGGGAAGGCTGTTGCAATTTATGATAAATTGGGAAGAAATGGAACACTGGTTTCAGATAACGAAGTGCTTGATGATATGGCATTAACCACACCTAAATGCTGCAGAGTCTTTTTTTGTGGATCAGACTTTGCAGGAAAAAGTACACTTTGTAGCTCCATATATCATAATTTAAGTTCTGCAAAGTTACCTTACATGGATCAGATCAGAACTCTAGTAAATCCAGTTGAGCAGATCGCAAGAATTGCAGAAGTCAGGATAAAGATCCTCCGAGACGGTGACACCAAAATCTCATTATGGAACCTTTCTGACCAACATGACATTTTTGCACTGCATGATATCATGTTTCCAGGGAACGGTAGTTCCTCGTGCTTCTTTATAATTTCTAGCTTGCTCAAGAGGCAGACAAACAAAGAACCAAAGAGCCCAGAAGAGATTGAAGATGAATTCTTATACTGGCTGAGATTTGTAGTTTTAAATTTCAAAAGAGCACAATCACAAACCATAAGACCTCATATAACTATAGTTCTCACACACTCGGACAAAGTTCAGCATTTATATGAAAACTTGCGGTCCATACTTACTACTATAATTCAAAAGCTAAGGGAAAAGTTTCAAGAGTTTGTGGAGCTGTATCCGACAGCATTCATGGTGGACGCAAGATCGTCAGTGTCCGTTAGCAAGCTTACACATCACTTGCGAAAAACTAGTATGACAATTCTTCAAAGAGCTCCAAAACTGTATCAAATATGCAATGAGATGATGAATCTATTATCTGTTTGGAGGTCAGAAAATTATAACAAATCAGTTATAAAATGGAGCGAATTCTGCAAGTTATGTCAACTTAATGTTCCATCTCTGCGAATTCGATCAAGAAACGATAACATGGAAAATGTAGAGAAAAGGAGGCAAGCGGTGGCCAGCTCATTGCATCTCATAGATGAAGTGATCTTCTTTCAAGAGCTTGGATATCTTATATTAGACAGTATGTGGTTCTTTGGCAACGTACTCAAGCAGCTCACAAAATTAGACTCTGGAAATGTGAACAAAACTAACAGAAATGGGTTTTTTAGTTGGTTAGAACTGGAGAAGATACTTCAATGGAACTTGCAAAGTCAAATTCTGGGATCGTATTCAAAAATAATTGACAATTTGGAAATAGATGATCTAATAAAAATAATGTTAAAACTTGAGTTATGCTATGAGCAAAATCCCGGTAACCTCGATACACTTCTCTTCATTCCATCACTTCTCTTGGAAAGCCAAGGAAGAATCCCAACCTGGGAGTTGGGCACAACGGAATGCAATTATGTTGGACGACAATTAGAATGTCATGATGTCAGACAAATGTTTCCAGCGACAGGATTCTTCCCAAGGCTTCAGCTCATAGGGAGGATGCCATAGTTACCTAAACAAAGATTGCGATGGGTGCGAA

Network for GWHGAAEX013637

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module12

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13516.5	LRR_6	316	338	0.84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.570
SRP064423	SRR2545915	Juvenile tuber	0.440
SRP108465	SRR5643513	five period of Gastrodia elata	1.070
	SRR5643514	five period of Gastrodia elata	0.620
	SRR5643515	five period of Gastrodia elata	0.620
	SRR5643524	five period of Gastrodia elata	0.600
	SRR5643525	five period of Gastrodia elata	0.940
	SRR5643528	five period of Gastrodia elata	0.380
	SRR5643658	five period of Gastrodia elata	0.470
	SRR5643659	five period of Gastrodia elata	0.260
	SRR5643660	five period of Gastrodia elata	0.140
	SRR5643661	five period of Gastrodia elata	0.220
	SRR5643662	five period of Gastrodia elata	0.470
	SRR5643663	five period of Gastrodia elata	0.240
	SRR5643664	five period of Gastrodia elata	0.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.790
SRP279888	Gastro	Gastrodia elata tuber	0.54
	Juven	Juvenile tuber	0.85
	Mother_Gastro	Mother tuber of Gastrodia elata	6.25
	Mother_Juven	Mother tuber of Juvenile	1.29