Detail information of GWHGAAEX013640/evm.TU.scaffold_51.42


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG27296.00E-46ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation
nrgi|743765807|ref|XP_010913130.1|2.35E-59PREDICTED: protein cornichon homolog 1-like [Elaeis guineensis]
Swissprottr|Q9C7D7|CNIH1_ARATH2.00E-46Protein cornichon homolog 1
trEMBLtr|F2DXS0|F2DXS0_HORVD5.00E-57Predicted protein {ECO:0000313|EMBL:BAJ99891.1}
TAIRAT3G121806.00E-46Cornichon family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005720248602063616+
Transcript Sequence

Network for GWHGAAEX013640

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03311.13Cornichon61263.10E-36
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.260
SRR2545915Juvenile tuber6.360
SRP108465SRR5643513five period of Gastrodia elata4.170
SRR5643514five period of Gastrodia elata5.930
SRR5643515five period of Gastrodia elata3.970
SRR5643524five period of Gastrodia elata4.640
SRR5643525five period of Gastrodia elata1.600
SRR5643528five period of Gastrodia elata1.980
SRR5643658five period of Gastrodia elata1.940
SRR5643659five period of Gastrodia elata2.220
SRR5643660five period of Gastrodia elata2.500
SRR5643661five period of Gastrodia elata2.000
SRR5643662five period of Gastrodia elata1.670
SRR5643663five period of Gastrodia elata1.800
SRR5643664five period of Gastrodia elata1.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.580
SRR6049655Rhizomagastrodiae_C368-T10_good_12.080
SRR6049656Rhizomagastrodiae_C368-T07_good_12.570
SRR6049657Rhizomagastrodiae_C368-T07_good_11.140
SRR6049658Rhizomagastrodiae_C368-T04_good_11.390
SRR6049659Rhizomagastrodiae_C368-T04_good_12.070
SRR6049660Rhizomagastrodiae_C368-T01_good_12.360
SRR6049661Rhizomagastrodiae_C368-T04_good_11.720
SRR6049662Rhizomagastrodiae_C368-T01_good_13.350
SRR6049663Rhizomagastrodiae_C368-T01_good_12.430
SRR6049664Rhizomagastrodiae_C368-T10_good_13.390
SRR6049665Rhizomagastrodiae_C368-T10_good_13.390
SRP279888GastroGastrodia elata tuber 1.52
JuvenJuvenile tuber1.38
Mother_GastroMother tuber of Gastrodia elata 2.30
Mother_JuvenMother tuber of Juvenile 1.36