Detail information of GWHGAAEX013651/evm.TU.scaffold_51.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284030079|ref|YP_003380010.1| | 1.00E-49 | beta-galactosidase [Kribbella flavida DSM 17836] |
| KOG | KOG0496 | 0 | Beta-galactosidase |
| nr | gi|672138941|ref|XP_008793242.1| | 0 | PREDICTED: beta-galactosidase [Phoenix dactylifera] |
| Swissprot | tr|P45582|BGAL_ASPOF | 0 | Beta-galactosidase (Precursor) |
| trEMBL | tr|B7EU06|B7EU06_ORYSJ | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
| TAIR | AT3G13750 | 0 | beta galactosidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000057 | 2910841 | 2923621 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013651
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01301.18 | Glyco_hydro_35 | 35 | 339 | 1.40E-117 |
| PF02140.17 | Gal_Lectin | 751 | 838 | 1.80E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 60.100 |
| SRR2545915 | Juvenile tuber | 35.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.400 |
| SRR5643514 | five period of Gastrodia elata | 11.140 | |
| SRR5643515 | five period of Gastrodia elata | 12.140 | |
| SRR5643524 | five period of Gastrodia elata | 12.640 | |
| SRR5643525 | five period of Gastrodia elata | 72.980 | |
| SRR5643528 | five period of Gastrodia elata | 95.120 | |
| SRR5643658 | five period of Gastrodia elata | 98.670 | |
| SRR5643659 | five period of Gastrodia elata | 3.570 | |
| SRR5643660 | five period of Gastrodia elata | 2.390 | |
| SRR5643661 | five period of Gastrodia elata | 2.160 | |
| SRR5643662 | five period of Gastrodia elata | 0.840 | |
| SRR5643663 | five period of Gastrodia elata | 1.410 | |
| SRR5643664 | five period of Gastrodia elata | 1.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 56.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 198.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 199.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 232.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.06 |
| Juven | Juvenile tuber | 9.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 220.76 | |
| Mother_Juven | Mother tuber of Juvenile | 50.77 |