Detail information of GWHGAAEX013660/evm.TU.scaffold_51.84


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|325295438|ref|YP_004281952.1|6.00E-4050S ribosomal protein L13 [Desulfurobacterium thermolithotrophum DSM 11699]
KOGKOG32039.00E-69Mitochondrial/chloroplast ribosomal protein L13
nrgi|643740729|gb|KDP46319.1|1.36E-112hypothetical protein JCGZ_10159 [Jatropha curcas]
Swissprottr|P51292|RK13_PORPU5.00E-3150S ribosomal protein L13, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01366}
trEMBLtr|A0A067LP92|A0A067LP92_JATCU5.00E-113Uncharacterized protein {ECO:0000313|EMBL:KDP46319.1}
TAIRAT3G017909.00E-69Ribosomal protein L13 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005745353084542541-
Transcript Sequence

Network for GWHGAAEX013660

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00572.17Ribosomal_L13291474.00E-45
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02871RP-L13, MRPL13, rplM Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.770
SRR2545915Juvenile tuber30.800
SRP108465SRR5643513five period of Gastrodia elata30.470
SRR5643514five period of Gastrodia elata27.010
SRR5643515five period of Gastrodia elata25.320
SRR5643524five period of Gastrodia elata28.920
SRR5643525five period of Gastrodia elata18.310
SRR5643528five period of Gastrodia elata24.390
SRR5643658five period of Gastrodia elata15.800
SRR5643659five period of Gastrodia elata35.930
SRR5643660five period of Gastrodia elata35.900
SRR5643661five period of Gastrodia elata32.390
SRR5643662five period of Gastrodia elata33.840
SRR5643663five period of Gastrodia elata31.230
SRR5643664five period of Gastrodia elata29.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.520
SRR6049655Rhizomagastrodiae_C368-T10_good_151.310
SRR6049656Rhizomagastrodiae_C368-T07_good_139.620
SRR6049657Rhizomagastrodiae_C368-T07_good_134.680
SRR6049658Rhizomagastrodiae_C368-T04_good_131.120
SRR6049659Rhizomagastrodiae_C368-T04_good_126.900
SRR6049660Rhizomagastrodiae_C368-T01_good_135.590
SRR6049661Rhizomagastrodiae_C368-T04_good_136.950
SRR6049662Rhizomagastrodiae_C368-T01_good_143.240
SRR6049663Rhizomagastrodiae_C368-T01_good_140.320
SRR6049664Rhizomagastrodiae_C368-T10_good_145.830
SRR6049665Rhizomagastrodiae_C368-T10_good_145.830
SRP279888GastroGastrodia elata tuber 46.06
JuvenJuvenile tuber45.14
Mother_GastroMother tuber of Gastrodia elata 21.89
Mother_JuvenMother tuber of Juvenile 31.65