Detail information of GWHGAAEX013670/evm.TU.scaffold_52.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08593.00E-130Synaptobrevin/VAMP-like protein
nrgi|743889502|ref|XP_010910867.1|3.38E-141PREDICTED: vesicle-associated membrane protein 711 [Elaeis guineensis]
Swissprottr|Q9LFP1|VA713_ARATH9.00E-131Vesicle-associated membrane protein 713
trEMBLtr|M5XG93|M5XG93_PRUPE2.00E-140Uncharacterized protein {ECO:0000313|EMBL:EMJ25157.1}
TAIRAT5G111503.00E-130vesicle-associated membrane protein 713

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000048526253548182+
Transcript Sequence

Network for GWHGAAEX013670

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13774.5Longin291081.80E-23
PF00957.20Synaptobrevin1242113.20E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08515VAMP7 SNARE interactions in vesicular transport map04130

Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms39.350
SRR2545915Juvenile tuber26.180
SRP108465SRR5643513five period of Gastrodia elata24.330
SRR5643514five period of Gastrodia elata25.650
SRR5643515five period of Gastrodia elata20.000
SRR5643524five period of Gastrodia elata20.540
SRR5643525five period of Gastrodia elata52.200
SRR5643528five period of Gastrodia elata41.580
SRR5643658five period of Gastrodia elata67.050
SRR5643659five period of Gastrodia elata21.420
SRR5643660five period of Gastrodia elata20.790
SRR5643661five period of Gastrodia elata19.440
SRR5643662five period of Gastrodia elata21.250
SRR5643663five period of Gastrodia elata19.400
SRR5643664five period of Gastrodia elata23.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.580
SRR6049655Rhizomagastrodiae_C368-T10_good_127.280
SRR6049656Rhizomagastrodiae_C368-T07_good_126.700
SRR6049657Rhizomagastrodiae_C368-T07_good_123.640
SRR6049658Rhizomagastrodiae_C368-T04_good_130.700
SRR6049659Rhizomagastrodiae_C368-T04_good_129.950
SRR6049660Rhizomagastrodiae_C368-T01_good_132.200
SRR6049661Rhizomagastrodiae_C368-T04_good_127.350
SRR6049662Rhizomagastrodiae_C368-T01_good_124.050
SRR6049663Rhizomagastrodiae_C368-T01_good_126.940
SRR6049664Rhizomagastrodiae_C368-T10_good_125.310
SRR6049665Rhizomagastrodiae_C368-T10_good_125.310
SRP279888GastroGastrodia elata tuber 32.89
JuvenJuvenile tuber44.99
Mother_GastroMother tuber of Gastrodia elata 25.98
Mother_JuvenMother tuber of Juvenile 21.69