Gene detail

Detail information of GWHGAAEX013671/evm.TU.scaffold_52.6

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1987	0	Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains
nr	gi\|672140330\|ref\|XP_008793966.1\|	0	PREDICTED: uncharacterized protein LOC103710127 [Phoenix dactylifera]
Swissprot	tr\|Q84WU2\|UBP13_ARATH	5.00E-18	Ubiquitin carboxyl-terminal hydrolase 13
trEMBL	tr\|D7SUW3\|D7SUW3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21062.3}
TAIR	AT2G25320	0	TRAF-like family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000048	612206	641953	-

Transcript Sequence
>GWHTAAEX013671 CTAACATCCATAATCGTTCATCACATCCCCTCTAAGCTTCCCAACTAATGTATTGTTTTTCTTTTTCCTCCGCTCTCCTTTTTCTTTTTCCCCATGTTGTCTATATATCATCTCCTCCTGGAAATGCTAATGAGCCTGTAGCTCCTCTTTTTCATGACCGGATAGACAGAAACGTTCGAAGGAGGGAGATCAGCGGGGTTTGCCGGGCGAGATTTCCCAGTTCGATTCATCTATTTGTCCACGATGAAGCCCGCGCCTTCGTCGTCATCTTCATCTTCCTCTGCCTCTCCGTCCTCAGCCGCGCCGGAGGACCAGCAGGCGGAGGCCTGGGAAGTGGCCGAAACGCGGCAGGCCGCAGCAGTTACGTCATCAGAAGAAGCTCCAGTGTCATCGCCGGCGACCTCGGCTGCCACGGCAGCCACGGTTAGAGAGAGCGGGGGCCAGGAGTCGGTGTGGGTGGAGAAACGCGGAGAGTACTCTGCGTTGTGCAGGTGGTCGGTGGCGCAGTTTCCTCGTGCAAAGGCCCGCGCGCTGTGGAGCCGCTACTTCGAGGTCGGAGGCTACGACTGCCGCCTGCTAATCTACCCGAAGGGCGACTCCCAGGCCCTGCCGGGCTATTTCTCCGTCTACCTTCAGATCGTTGATCCCCGGGGATCTTCTTCTACCAAGTGGGACTGCTTCGCTAGCTACCGCCTTTCCGTTGTCAACCTACTCGACGATTCCAAATCCATCACCCGCGACTCATGGCACCGATTCTCCTCCAAGAAGAAGTCCCATGGCTGGTGCGACTTCACCCCCTCGTCCGCTATTCTTGACCCTCGAGCGGGGTTCCTTTCCCCTCCTTCCGACTCTCTTGTCATCACAGCCGACATCCTGCTCCTTCACGAGTCCGTTTCCTTCTCCCGTGACAGTGCTGCTTCCGCAGCACTCGAACCTTCCACCTCATCTTCTTCATCTTCAACGGATGTGCTCAGCGGCAAGTTCTCTTGGAAGGTTCACAACTTCAGCCTCTTTCGTGACATGATCAAAACGCAGAAGATCATGAGCCCCGTCTTCCCTGCTGGAGATTGCAACCTTAGAATCAGCGTCTACCAGAGCTCTGTGTCCGATACGGAGCACCTTTCCATGTGTCTGGAGAGCAAAGACACGGACAAGACACTGCTTCCTGATCGCAGTTGCTGGTGCCTCTTTCGCATGTCTGTGTTGAGCCAACGCCAGGCCGGAACCAACCATGTCCACCGAGACTCTTACGGCCGCTTCGCTGCAGACAGTAAGGGAGGAGACAATACTAGCCTTGGCTGGAACGATTTTATGAAAATGTCTGAATTTTTGGACAACGAGGCTGGTTTTTTAGTTGATGACACGGCTGTATTCAGCACCTCGTTTCATGTTATCAAAGAGTCTAGCAACTTCTCCAAGAACCCCGGGTTAATGCTTGGGGGAAAGCTTGCTGCAAGGAAGTCAGATGGTCACTTTGGCAAGTTCACGTGGAGGATTGACAATTTCACTCGGTTGAAGGACCTGCTGAAGAAGAGAAAGATCACCGGGCTCTGTGTGAAGAGCAGGAGGTTCCAAATTGGCAACCGGGACTGCCGTCTCATAGTTTATCCAAGGGGTCAATCACAACCACCATGCCACCTCTCAGTTTTTCTTGAGGTCACTGACTCCCGAAACACAACCAGCGATTGGAGTTGCTTTGTGAGTCATCGGCTTTCTGTTGTAAATCAGAAGATGGAGGAGAAATCTTTGACTAAGGAATCACAAAATCGGTATTCCAAGGCAGCAAAAGATTGGGGCTGGCGTGAATTTGTTACCTTAACAAGTCTTTTTGATCATGAGTCTGGGTTTCTTGTTCAGGACACCGTTGTGTTCTCAGCTGAGGTTCTTATATTGAAGGAAACTTCGATTATGCAAGACTTCTGTGATGTTGAGCCATTTTCATCAGGTAATTCAGGGATGAATTCTGGTTCTTCAATGGATGCCATTTCCAAAAGGGGTGCATTCACTTGGAGAGTGGAGAACTTCTTATCCTTTAAGGAAATCATGGAAACTCGGAAAATATTTAGCAAATTTTTTCAAGCAGGCGGCTGTGAGCTGAGAATAGGTGTGTATGAATCATTTGATACAATATGCATATATTTAGAGAGCGATCAATCTGTTGGTAGTGATCCTGAAAAAAATTTTTGGGTTCAGTATAGAATTGCTGTTGTTAATCAGAAGTACCCTGCTAAAACTGTGTGGAAAGAATCTTCTATTTGTACCAAAACATGGAATAATTCTGTTCTCCAGTTTATGAAGGTACCGGATATGTTGGAATCCGATGCTGGCTTTCTTGTTCGTGACACAGTGGTATTTATTTGCGAAATCATAGATTTTTGCCCTTGGTTTGAGTTTTCTGATCTAGAGGTTTTGGCTTCTGAGGATGATCAGGATGCATTGTCAACGGATCCTGACGAACTAATAGAGTCTGAAGAAAGTGATGGCATTAGTGCTGATGAAGATGACACATTTAGAAATTTTCTTTCCCAAGCAGGTTTTCATCTTACCCATGGAATTAATCCATCTCAGCCTCAGGTTACTTTAAGAGAAAAGCTTTTAATGGACGCTGGTGCTATCGCTGGATTTTTGACTGGCCTGCGCATATATCTTGATGACCCTGCAAAGATAAAACGCATGCTCCTTCCCACTAAATTATCTGGAAGCGAAGGTAACAAGAAAGCTGCAGATGCAGGAGATGCAGATCCTCCAAGTTTAATGAATTTGTTGATGGGGGTTAAGGTCTTACAGCAAGCTATCATAGATTTGCTCTTAGATATAATGGTTGAGTGCTGCCAACCATCAGAAGGAAGAAATGATTGTGATTCTGAAGCAAGTCCAAACGCATGTTCAGAGTCTAATGAAGCGAGTACATCTATGGAGCTCAATGGGTTAGGTGAAGTTAGAGAGGATACGCAGTGTCATTTGTATAACAGAATGGGTTCTGCAACTGATGAAGTTGTTCATTCTCATGCAGTTCAGAGTTCAGACTTACTTACGACTGGGTCACCTGACAAAAATAACCCTGAGCAGATCATATTTCCTCCAGAAACTTCTGCTGGTGACCTTCCTGCTGATGATAGCTTTCTTCGAGTTCCTAAGACAAACTGGCTAGAGCAATCTGAGGAGCTCTTAGGATTAATTGTCAATTCACTGAGAGCCCTTGATAATCCTGCACCTCAAAAATGTCCTGAACCAAGGAGGCATCCTCAATCAGTGCAAAAGATTGCAATTGTACTAGATAAAGCTCCTAAGCATCTTCTGCAAGATCTGATTGCTCTAGTTCCTAAGTTAGTGGATTATTCAGAGCATACGCTTGCTGCTTATGCACTTTTAGATTGTCTTCAAAAACCAGATATTGAGCCTTCACTGCGAACGTCGGTTTTTGGTGCTTTAGGTCAGTTGGAATTTGGCTGTGAAGTTTGGGAACATGTGTTATTTCAAGCTTTTGAGATTCTAACTGATTCTCATGATGAATCCCTTGTGGCCGTAATTTCTTTTGTCTTTAAGGCTGCAGCTCAGTGTCAGCTTTTTCCTCAAGCTGTCAGAGCTGTACGCACTAGGCTGAAAAGTCTTGGTGCTGATGTTGCACCCTATGTGCTGGATGTTCTAACAAAAACTGTGCATACTTGGACAGATGGAGCTGCACTTTTTTTAAGGGAAATTGACTCTCATTGTGAACCTGATGGAAGCTGCCTAACCACAACCAGTGGGTATTTTTCCAATGGCGTTAATGGACTTCCTCCAGAACCTATGGATGAAAGTCAGGACCATGCCATGCATGGGTGCCTTCATTTCTGTGATGTGTACATGTTAATTGAGATGCTATCTGTACCTGGTTTGTTTGCTGAAGCTTCAGAGGTATTTGAAAGAGCTTTGCTTAAAGGAACCATTGGACTGCAACCGGTGGCAATGATCTTAGAAAAGCGTCATTCTCAGAAGTTAAGTGCAAGGTCGAAGCTTGCTGCTGACGATCTGCAGGCAAAACAAATTCTGGCAGATGGAAATGATGAGCAGTTTTCCATTCATGAGGAGGATTTTGCATCAATGCTTTCACTTGGTGGAGTATTATCGGTCTCCCGACAACCTAGAGTTCAAGATTTTGTGAGGATGTTGTATGCTATAATGTTTAAAATATATCCTGAAGAACACTACAAACTTAGGATGCTGAAAGGGCTTGTTGATCGTGCAGCTAATAATACTTCTGAGAGGTGCCAAGGGTTTGATATTGATATGGATGTGCTGGTGTTTCTTGTCAGAGAGGAAGAAGGGATTGCTAGGCCTGCCCTCAACATGATGCGTGAAGTTGCTCAGCTTGCACAGGTTGATCGTGCATCTCTTTGGCACCAATTATGTGCCACTGAGGATGAGCTTATTCGTGTACGAGAAGAAAAAAAAAGTGAAAATGATAAATTGGCTAGGGAAAAGTCTGATTTGATTCATAGGCTAAAAGAGTCGGAGGCAAATTATTCCAGCCTTAAGATTGAAATGAAAAATGAATCAGATCGCTTTGTTTGGAAAAAGAAAGAACTCTCTGAACAGATAGTGTCTGTTGAAAATCAACTTGAATGGATCCGATCAGAAAAAGATGAGGAAATTAAAAAGCTTTCTGCTGAGCGGAGAGTCCTTCAGGACCACCTTCAGGAAGCAGAGACACAACTTTCACAGTTGAAATCTAGGAAACGGGATGAGCTGAAGAGGGTGCTCAAGGAGAAGAATGCATTAGCTGAAAGGTTAAAGGATGCAGAAGCTGCACGAAAAAGATTTGATGAAGAGCTAAAACGGTTTGCAACGGATACAAGTAGTCGCGAGGAAGTTAGGCAATCTCTTGAAGGCGAAATTCGGAGATTGACAGAGACAGTTGGGCAAATTGAAGGAGAGAAGAGAGAGAAAGAGGCGCAAGTTGCTCGATGTGAAGCTTACATTGATGGAATGGAGGCCAAATTGCAGGCGTGCCGGCAATATATCCAATCCCTCGAAGCTTCCATCCGAGACGAAATGAGCCGCCATGCCCCACTCTATGGTGTTGGCGTTGATGCCTTGTCGTTAAAGGAGCTAGAGACACTCGCCCGCATACACCAGGAGGGGCTGCGGCAGATACACTCGATCCAGCAGCGTAAGGGCAGCAGCGGGAACAGCCCGCACCTCCATGGGCTGTATTCTGCCGCTCCTCAGCCTCCCGCCGGCCTCCCGCCCTCAGGCATGTCCAGCAATGGCCACATGAACGACGCTGTGGGGCCATGGTTCAGTGCCACTTAAAAAAACAGGTATTTGTTTCTCAGATGATGATATCATCATATTCATGTATGCTGCATCTCTACATTTCCAGGCTCTTATTTTATTCTAGTTGATTTTTTCCGGGCAGCCAATATTGTTGTTGTTCTACCTTTGCATCCATCCCTATGGCCATTCCTGCTATGTTATTATGCATCATTCTCATTGAGCTTGTAGAACTGTAGGATATTCAAGTAGAGAGATGAGCTCTGTCATATAAATAAGATAGAGACACTCGAGGGTTCCATACTGTAATAGCTTATAGAGTATATGAGCAAAATTTCCAGCACTATCAGAGCATCAAATGAAAAAAAGAATAAAAAAATGCATTGGAAATCATGTTATGTTCGAGGATAGGCCATGAAATGATCGAATAGAATGAAGTATTTTTTTATTATGTTTGATCAAGTTAAATTTGCTTTTGAAATATCAAGCAAGCATAATGGAATACTTGAAAGGAATGGTCTAGACGTCCTCATTTTGGCTGTTAAGAGTAAATGCTAGTAACATTAAAATGCACTAGAATTTTTGTAAATTAGGAGTCCCCCATATCCTGCGTTTCCTCTGCCTTTTGTTTCTTTTCAATGGGATTCACAGAATGAATACACAAGCTTAGGTTCTTAGTTCCTTTTTCTAAGCAATCAAATATTTTTAATAAAATTATAATTATTATTTTGATTAGTAAATTTCACTCATTTTTTATTAGAATCATTAATTATGCTGAGACACTGAGCACAACACCCAACGGGATAATGTAGTAACGTTCAAGCCAGAAAACACAGAAAAACTCTCCTTTATCCCAACCGCACGAAGCCTTTGCATTCTACAGTTGAAATAGTTAGCTTTGTAGTATATATGACATGACAGTGTGATGCCTTAGCCTTTTTATAAAAGTTAATTCAATAGCGAGTGACAAAGTGTGCGGAACCATTCCTCTAATTGCACTTAACCTCAAATGTCACTATTATATAATTTTTTTTCTTGCTTTTAATGCGATTTTGTCCAATTTTTTTGGGCACTGTAGCAGTGTTTTTTATTGTGAATGATGCTAGCTTAGTGGTCAAGACAGTGAACTTTGATTTTATTAGTCACAAATTTGCAGTATATTTGAAATTTATCTATAGTTAAAAAAAAAGTATTTTTGTTATAGCATAATTTTTATGCTAACTCTTGTAAAT

Network for GWHGAAEX013671

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00917.25	MATH	99	208	3.50E-08
PF00917.25	MATH	442	549	4.40E-11
PF00917.25	MATH	597	704	0.0018

Protein Sequence

>GWHPAAEX013671
MKPAPSSSSSSSSASPSSAAPEDQQAEAWEVAETRQAAAVTSSEEAPVSSPATSAATAATVRESGGQESVWVEKRGEYSALCRWSVAQFPRAKARALWSRYFEVGGYDCRLLIYPKGDSQALPGYFSVYLQIVDPRGSSSTKWDCFASYRLSVVNLLDDSKSITRDSWHRFSSKKKSHGWCDFTPSSAILDPRAGFLSPPSDSLVITADILLLHESVSFSRDSAASAALEPSTSSSSSSTDVLSGKFSWKVHNFSLFRDMIKTQKIMSPVFPAGDCNLRISVYQSSVSDTEHLSMCLESKDTDKTLLPDRSCWCLFRMSVLSQRQAGTNHVHRDSYGRFAADSKGGDNTSLGWNDFMKMSEFLDNEAGFLVDDTAVFSTSFHVIKESSNFSKNPGLMLGGKLAARKSDGHFGKFTWRIDNFTRLKDLLKKRKITGLCVKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTTSDWSCFVSHRLSVVNQKMEEKSLTKESQNRYSKAAKDWGWREFVTLTSLFDHESGFLVQDTVVFSAEVLILKETSIMQDFCDVEPFSSGNSGMNSGSSMDAISKRGAFTWRVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPEKNFWVQYRIAVVNQKYPAKTVWKESSICTKTWNNSVLQFMKVPDMLESDAGFLVRDTVVFICEIIDFCPWFEFSDLEVLASEDDQDALSTDPDELIESEESDGISADEDDTFRNFLSQAGFHLTHGINPSQPQVTLREKLLMDAGAIAGFLTGLRIYLDDPAKIKRMLLPTKLSGSEGNKKAADAGDADPPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGRNDCDSEASPNACSESNEASTSMELNGLGEVREDTQCHLYNRMGSATDEVVHSHAVQSSDLLTTGSPDKNNPEQIIFPPETSAGDLPADDSFLRVPKTNWLEQSEELLGLIVNSLRALDNPAPQKCPEPRRHPQSVQKIAIVLDKAPKHLLQDLIALVPKLVDYSEHTLAAYALLDCLQKPDIEPSLRTSVFGALGQLEFGCEVWEHVLFQAFEILTDSHDESLVAVISFVFKAAAQCQLFPQAVRAVRTRLKSLGADVAPYVLDVLTKTVHTWTDGAALFLREIDSHCEPDGSCLTTTSGYFSNGVNGLPPEPMDESQDHAMHGCLHFCDVYMLIEMLSVPGLFAEASEVFERALLKGTIGLQPVAMILEKRHSQKLSARSKLAADDLQAKQILADGNDEQFSIHEEDFASMLSLGGVLSVSRQPRVQDFVRMLYAIMFKIYPEEHYKLRMLKGLVDRAANNTSERCQGFDIDMDVLVFLVREEEGIARPALNMMREVAQLAQVDRASLWHQLCATEDELIRVREEKKSENDKLAREKSDLIHRLKESEANYSSLKIEMKNESDRFVWKKKELSEQIVSVENQLEWIRSEKDEEIKKLSAERRVLQDHLQEAETQLSQLKSRKRDELKRVLKEKNALAERLKDAEAARKRFDEELKRFATDTSSREEVRQSLEGEIRRLTETVGQIEGEKREKEAQVARCEAYIDGMEAKLQACRQYIQSLEASIRDEMSRHAPLYGVGVDALSLKELETLARIHQEGLRQIHSIQQRKGSSGNSPHLHGLYSAAPQPPAGLPPSGMSSNGHMNDAVGPWFSAT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.500
SRP064423	SRR2545915	Juvenile tuber	24.880
SRP108465	SRR5643513	five period of Gastrodia elata	18.980
	SRR5643514	five period of Gastrodia elata	16.310
	SRR5643515	five period of Gastrodia elata	15.630
	SRR5643524	five period of Gastrodia elata	16.300
	SRR5643525	five period of Gastrodia elata	17.590
	SRR5643528	five period of Gastrodia elata	17.180
	SRR5643658	five period of Gastrodia elata	18.590
	SRR5643659	five period of Gastrodia elata	19.130
	SRR5643660	five period of Gastrodia elata	20.990
	SRR5643661	five period of Gastrodia elata	18.230
	SRR5643662	five period of Gastrodia elata	17.570
	SRR5643663	five period of Gastrodia elata	17.870
	SRR5643664	five period of Gastrodia elata	18.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	25.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.880
SRP279888	Gastro	Gastrodia elata tuber	15.39
	Juven	Juvenile tuber	28.70
	Mother_Gastro	Mother tuber of Gastrodia elata	16.46
	Mother_Juven	Mother tuber of Juvenile	21.43