Detail information of GWHGAAEX013673/evm.TU.scaffold_52.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2577 | 2.00E-88 | Transcription factor E2F/dimerization partner (TDP) |
| nr | gi|329568040|gb|AEB96142.1| | 4.05E-148 | E2F protein [Cocos nucifera] |
| Swissprot | tr|Q9FNY0|E2FA_ARATH | 2.00E-104 | Transcription factor E2FA |
| trEMBL | tr|F5A666|F5A666_COCNU | 2.00E-148 | E2F protein {ECO:0000313|EMBL:AEB96142.1} |
| TAIR | AT2G36010 | 2.00E-88 | E2F transcription factor 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000048 | 885428 | 912711 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013673
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02319.19 | E2F_TDP | 119 | 182 | 3.20E-23 |
| PF16421.4 | E2F_CC-MB | 197 | 296 | 4.70E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | E2F-DP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06620 | E2F3 | Cell cycle | map04110 |
| Cellular senescence | map04218 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0005667 | Cellular Component | transcription factor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.520 |
| SRR2545915 | Juvenile tuber | 4.470 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.280 |
| SRR5643514 | five period of Gastrodia elata | 0.480 | |
| SRR5643515 | five period of Gastrodia elata | 0.260 | |
| SRR5643524 | five period of Gastrodia elata | 0.240 | |
| SRR5643525 | five period of Gastrodia elata | 0.810 | |
| SRR5643528 | five period of Gastrodia elata | 0.210 | |
| SRR5643658 | five period of Gastrodia elata | 0.380 | |
| SRR5643659 | five period of Gastrodia elata | 0.090 | |
| SRR5643660 | five period of Gastrodia elata | 0.030 | |
| SRR5643661 | five period of Gastrodia elata | 0.100 | |
| SRR5643662 | five period of Gastrodia elata | 0.060 | |
| SRR5643663 | five period of Gastrodia elata | 0.070 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.900 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.41 |
| Juven | Juvenile tuber | 0.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.24 | |
| Mother_Juven | Mother tuber of Juvenile | 0.18 |