Detail information of GWHGAAEX013676/evm.TU.scaffold_52.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779864|ref|YP_008431664.1| | 3.00E-25 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| KOG | KOG0087 | 1.00E-131 | GTPase Rab11/YPT3, small G protein superfamily |
| nr | gi|743815719|ref|XP_010930425.1| | 1.80E-139 | PREDICTED: ras-related protein RABA2a-like [Elaeis guineensis] |
| Swissprot | tr|O04486|RAA2A_ARATH | 4.00E-132 | Ras-related protein RABA2a (Precursor) |
| trEMBL | tr|M0TB36|M0TB36_MUSAM | 2.00E-136 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P28910_001} |
| TAIR | AT1G09630 | 1.00E-131 | RAB GTPase 11C |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000048 | 1453253 | 1489535 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013676
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 14 | 174 | 4.60E-61 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07904 | RAB11A | Endocytosis | map04144 |
| Pancreatic secretion | map04972 | ||
| Vasopressin-regulated water reabsorption | map04962 | ||
| Endocrine and other factor-regulated calcium reabsorption | map04961 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.750 |
| SRR2545915 | Juvenile tuber | 45.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 83.940 |
| SRR5643514 | five period of Gastrodia elata | 83.740 | |
| SRR5643515 | five period of Gastrodia elata | 81.590 | |
| SRR5643524 | five period of Gastrodia elata | 82.450 | |
| SRR5643525 | five period of Gastrodia elata | 106.890 | |
| SRR5643528 | five period of Gastrodia elata | 91.840 | |
| SRR5643658 | five period of Gastrodia elata | 114.260 | |
| SRR5643659 | five period of Gastrodia elata | 82.990 | |
| SRR5643660 | five period of Gastrodia elata | 97.480 | |
| SRR5643661 | five period of Gastrodia elata | 89.260 | |
| SRR5643662 | five period of Gastrodia elata | 82.280 | |
| SRR5643663 | five period of Gastrodia elata | 81.050 | |
| SRR5643664 | five period of Gastrodia elata | 84.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 77.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 64.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 83.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 77.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 76.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 72.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 68.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 78.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 102.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 80.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 123.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 123.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 91.07 |
| Juven | Juvenile tuber | 88.27 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 98.11 | |
| Mother_Juven | Mother tuber of Juvenile | 93.72 |