Detail information of GWHGAAEX013682/evm.TU.scaffold_52.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|217979052|ref|YP_002363199.1| | 2.00E-14 | NADH dehydrogenase I subunit D [Methylocella silvestris BL2] |
| KOG | KOG2870 | 2.00E-19 | NADH:ubiquinone oxidoreductase, NDUFS2/49 kDa subunit |
| nr | gi|586662241|ref|XP_006832812.1| | 6.85E-30 | hypothetical protein AMTR_s02650p00008680 [Amborella trichopoda] |
| Swissprot | tr|Q36450|NDUS2_NICSY | 1.00E-23 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 |
| trEMBL | tr|U5CV82|U5CV82_AMBTC | 3.00E-30 | Uncharacterized protein {ECO:0000313|EMBL:ERM98092.1} |
| TAIR | ATMI039 | 2.00E-19 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000048 | 1800939 | 1801346 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013682
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03935 | NDUFS2 | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 | ||
| Retrograde endocannabinoid signaling | map04723 | ||
| Thermogenesis | map04714 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.610 |
| SRR2545915 | Juvenile tuber | 0.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.890 |
| SRR5643514 | five period of Gastrodia elata | 3.480 | |
| SRR5643515 | five period of Gastrodia elata | 1.750 | |
| SRR5643524 | five period of Gastrodia elata | 1.200 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.390 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.300 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.670 | |
| SRR5643662 | five period of Gastrodia elata | 0.350 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.78 |
| Juven | Juvenile tuber | 1.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.31 | |
| Mother_Juven | Mother tuber of Juvenile | 2.03 |