Detail information of GWHGAAEX013687/evm.TU.scaffold_52.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|46447589|ref|YP_008954.1|4.00E-17hypothetical protein pc1955 [Candidatus Protochlamydia amoebophila UWE25]
KOGKOG19472.00E-97Leucine rich repeat proteins, some proteins contain F-box
nrgi|672111440|ref|XP_008800708.1|7.94E-148PREDICTED: F-box/LRR-repeat protein 12 [Phoenix dactylifera]
Swissprottr|Q9SRR1|FBL12_ARATH6.00E-98F-box/LRR-repeat protein 12
trEMBLtr|M0TUJ7|M0TUJ7_MUSAM3.00E-142Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P28940_001}
TAIRAT3G075502.00E-97RNI-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004822249462248135-
Transcript Sequence

Network for GWHGAAEX013687

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13516.5LRR_61441661.2
PF13516.5LRR_62953170.93
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.630
SRR2545915Juvenile tuber8.800
SRP108465SRR5643513five period of Gastrodia elata9.680
SRR5643514five period of Gastrodia elata9.830
SRR5643515five period of Gastrodia elata9.290
SRR5643524five period of Gastrodia elata8.340
SRR5643525five period of Gastrodia elata11.530
SRR5643528five period of Gastrodia elata10.460
SRR5643658five period of Gastrodia elata11.390
SRR5643659five period of Gastrodia elata11.480
SRR5643660five period of Gastrodia elata11.710
SRR5643661five period of Gastrodia elata9.910
SRR5643662five period of Gastrodia elata11.450
SRR5643663five period of Gastrodia elata12.180
SRR5643664five period of Gastrodia elata13.670
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.970
SRR6049655Rhizomagastrodiae_C368-T10_good_110.370
SRR6049656Rhizomagastrodiae_C368-T07_good_18.610
SRR6049657Rhizomagastrodiae_C368-T07_good_111.910
SRR6049658Rhizomagastrodiae_C368-T04_good_111.310
SRR6049659Rhizomagastrodiae_C368-T04_good_115.730
SRR6049660Rhizomagastrodiae_C368-T01_good_112.600
SRR6049661Rhizomagastrodiae_C368-T04_good_19.770
SRR6049662Rhizomagastrodiae_C368-T01_good_19.260
SRR6049663Rhizomagastrodiae_C368-T01_good_110.030
SRR6049664Rhizomagastrodiae_C368-T10_good_19.920
SRR6049665Rhizomagastrodiae_C368-T10_good_19.920
SRP279888GastroGastrodia elata tuber 16.96
JuvenJuvenile tuber17.83
Mother_GastroMother tuber of Gastrodia elata 10.50
Mother_JuvenMother tuber of Juvenile 10.21