Detail information of GWHGAAEX013691/evm.TU.scaffold_52.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2202 | 4.00E-168 | U2 snRNP splicing factor, small subunit, and related proteins |
| nr | gi|719988646|ref|XP_010252404.1| | 0 | PREDICTED: zinc finger CCCH domain-containing protein 5 [Nelumbo nucifera] |
| Swissprot | tr|Q9SY74|C3H5_ARATH | 1.00E-168 | Zinc finger CCCH domain-containing protein 5 |
| trEMBL | tr|W1NYH5|W1NYH5_AMBTC | 1.00E-178 | Uncharacterized protein {ECO:0000313|EMBL:ERM99729.1} |
| TAIR | AT1G10320 | 4.00E-168 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000048 | 2467729 | 2496010 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013691
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00642.23 | zf-CCCH | 212 | 232 | 3.70E-06 |
| PF00642.23 | zf-CCCH | 342 | 369 | 6.40E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0089701 | Cellular Component | U2AF |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.000 |
| SRR2545915 | Juvenile tuber | 12.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.950 |
| SRR5643514 | five period of Gastrodia elata | 17.620 | |
| SRR5643515 | five period of Gastrodia elata | 16.730 | |
| SRR5643524 | five period of Gastrodia elata | 16.550 | |
| SRR5643525 | five period of Gastrodia elata | 14.500 | |
| SRR5643528 | five period of Gastrodia elata | 12.380 | |
| SRR5643658 | five period of Gastrodia elata | 11.650 | |
| SRR5643659 | five period of Gastrodia elata | 21.230 | |
| SRR5643660 | five period of Gastrodia elata | 26.450 | |
| SRR5643661 | five period of Gastrodia elata | 18.750 | |
| SRR5643662 | five period of Gastrodia elata | 25.400 | |
| SRR5643663 | five period of Gastrodia elata | 25.500 | |
| SRR5643664 | five period of Gastrodia elata | 28.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.53 |
| Juven | Juvenile tuber | 22.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.02 | |
| Mother_Juven | Mother tuber of Juvenile | 23.77 |