Gene detail

Detail information of GWHGAAEX013694/evm.TU.scaffold_52.42

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|146298365\|ref\|YP_001192956.1\|	2.00E-12	two component regulator [Flavobacterium johnsoniae UW101]
nr	gi\|222636426\|gb\|EEE66558.1\|	1.36E-78	hypothetical protein OsJ_23077 [Oryza sativa Japonica Group]
Swissprot	tr\|C0LGQ9\|Y4294_ARATH	1.00E-48	Probable LRR receptor-like serine/threonine-protein kinase At4g20940
trEMBL	tr\|B9FVH1\|B9FVH1_ORYSJ	5.00E-79	Putative uncharacterized protein {ECO:0000313\|EMBL:EEE66558.1}
trEMBL	tr\|B9FVH1\|B9FVH1_ORYSJ	3.00E-09	Putative uncharacterized protein {ECO:0000313\|EMBL:EEE66558.1}
trEMBL	tr\|B9FVH1\|B9FVH1_ORYSJ	3.00E-07	Putative uncharacterized protein {ECO:0000313\|EMBL:EEE66558.1}
TAIR	AT4G20940	2.00E-48	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000048	2794255	2812284	+

Transcript Sequence
>GWHTAAEX013694 ATGGGCCTAGCCTTGCGCTTGCGAGTCGCGCCGCTCGAGTTGGGCCTACCCGAGCTGAACTTTCACGATGAGACTCACGATCGAAGGATTAGAACATCAAAATCAGAGGGCTTGCGGTGGTCACCGGACGTTGGCCCACAGGTCGAAAGAAAGCTTGCTGTTTCTGCAGTTTTCTTTGTGGCATTTCCACGGGCAAGTTGTGTGGATTCAATGGTATTTACCCATAACTCCTTTCCCTTCTTCGGCAAATTGCTCCTAGCTCAGGCAGTGATTACACTATCAACACAGCCATTCATAGAAGATGAAAACAACAAACCTTCAGCCGGATATGAGGGCAACTGTCAAGGGCGTGGGTCGACTGTCACAGTCAAGTCGATCCTGCTGGATATTGTCAGCGTTTATACCACTATCAATGAAGCCTCCATTTTCGAGTTTCGGCGGAAGACTGGGCATGTAGGCAACTGTAGGAAGCGTAGGTCAATCATCTCGGCTCAGATCGCATGGAAGCGTCAAGTTGCCTATGCCTTTAGGGAGAATTTTCCCTACATAGCCACCGCTTGGGAAGGGATAAATTCTCGCTCGTCCCATGGGTCTAGACTAACCCAAGGAGTGTTTAAACTACCCTTGATGCGAACTGGGTCACTAGATGCTATGGCCATTGTCTCGAAGCTGTCAAGGGATCGCCTGAGTTCGCTAGTACTGAGCCCAACACCTGAAGTCGCCGAATTTTGTAAAGAAGAAGAAGATAATGTAGAAAGTGAATCAGAGGCTCAGCAGCCTCTGATTGAGCGCGGGAAAGCATTCCTCCGTCCGCGTAGCTCTCATCGAGGCCGTCCGTTCCATTGCCTCCGCCGCGCCTTCCTCTGCTCTCGTTCCGTACGTTCTGCGGCCGCTCGCAGAAGCCCTATTTCACGGGCTACATCTCTGAGTCGTGGAACGAAGTCCACAGACTTCAACGACTGCCCTTCTTCATGGAACGACGTCGTTTGCAACAGGGAGAATGTGGAGGGCGTCGTGCTAGACGGCCTCGGCGTTTCCGGCTCAGTGGACCTCTCCGTCTTTTGCAATCTCTCCATGCTCTACCTGGATATCTCTTGCAACGCCTTCTCCTGGAAGATTCCAATGGATATCGGGAGGCTTCGGAGCATCCAGAACCTGTCTTTTGCCAGGAACAACTTCTCCGGTCCTTATCCGGACTCAATCGGAGATGTCTATTCATTGAGATCTCTCGATTTGAGTCACAACCATCTCTCCGGCGCCTTGCCTTCGTCCTTGAAGGGCCTCAGTTCGTTGGTCATTTTGAATCTCTCCTTCAACGAGTTCGAGAAGGGGATTTCGACTGGCTTGGGCTTGATTTTGACTTTGGAGTCGATTGATTTGAGCTGGAACAGATTGGGCGGTGATGTGGATTGGGAGTTTCTCACTCAGTCTGGAGTGGTGAATGTTGATTTCAGTGGGAATCTGTTGACGAGTTCTAACTCGAATGAGATGAAGTTTTTGTCGCAGGTGTCGGATTCGGTCAAGTATCTCAATCTTAGCCATAATCGGCTGACCGGATCACTGATTGATGGAGGAGCTCTCTACTTTTGGGAGCTTGAAAGCGTTGGATTTGAGTTACAATAA

Network for GWHGAAEX013694

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.5	LRR_8	382	440	3.20E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.790
SRP064423	SRR2545915	Juvenile tuber	4.300
SRP108465	SRR5643513	five period of Gastrodia elata	6.500
	SRR5643514	five period of Gastrodia elata	6.380
	SRR5643515	five period of Gastrodia elata	6.520
	SRR5643524	five period of Gastrodia elata	6.430
	SRR5643525	five period of Gastrodia elata	3.960
	SRR5643528	five period of Gastrodia elata	4.640
	SRR5643658	five period of Gastrodia elata	7.750
	SRR5643659	five period of Gastrodia elata	8.470
	SRR5643660	five period of Gastrodia elata	10.910
	SRR5643661	five period of Gastrodia elata	6.850
	SRR5643662	five period of Gastrodia elata	8.850
	SRR5643663	five period of Gastrodia elata	8.210
	SRR5643664	five period of Gastrodia elata	12.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.280
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.480
SRP279888	Gastro	Gastrodia elata tuber	14.09
	Juven	Juvenile tuber	11.04
	Mother_Gastro	Mother tuber of Gastrodia elata	7.72
	Mother_Juven	Mother tuber of Juvenile	13.12