Detail information of GWHGAAEX013695/evm.TU.scaffold_52.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|442555271|ref|YP_007365096.1| | 1.00E-07 | RNA recognition domain-containing protein [Lawsonia intracellularis N343] |
| KOG | KOG0123 | 2.00E-23 | Polyadenylate-binding protein (RRM superfamily) |
| nr | gi|449533142|ref|XP_004173536.1| | 4.90E-25 | PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus] |
| Swissprot | tr|P42731|PABP2_ARATH | 5.00E-24 | Polyadenylate-binding protein 2 |
| trEMBL | tr|M0TEY3|M0TEY3_MUSAM | 6.00E-25 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P05430_001} |
| TAIR | AT4G34110 | 2.00E-23 | poly(A) binding protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000048 | 2812700 | 2815335 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013695
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 37 | 88 | 6.40E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13126 | PABPC | RNA transport | map03013 |
| mRNA surveillance pathway | map03015 | ||
| RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.890 |
| SRR2545915 | Juvenile tuber | 3.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.640 |
| SRR5643514 | five period of Gastrodia elata | 13.630 | |
| SRR5643515 | five period of Gastrodia elata | 14.570 | |
| SRR5643524 | five period of Gastrodia elata | 12.830 | |
| SRR5643525 | five period of Gastrodia elata | 7.670 | |
| SRR5643528 | five period of Gastrodia elata | 7.870 | |
| SRR5643658 | five period of Gastrodia elata | 14.540 | |
| SRR5643659 | five period of Gastrodia elata | 11.350 | |
| SRR5643660 | five period of Gastrodia elata | 12.990 | |
| SRR5643661 | five period of Gastrodia elata | 12.350 | |
| SRR5643662 | five period of Gastrodia elata | 14.340 | |
| SRR5643663 | five period of Gastrodia elata | 16.440 | |
| SRR5643664 | five period of Gastrodia elata | 14.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.32 |
| Juven | Juvenile tuber | 14.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.23 | |
| Mother_Juven | Mother tuber of Juvenile | 14.86 |