Detail information of GWHGAAEX013696/evm.TU.scaffold_52.44


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41972.00E-14FOG: PPR repeat
nrgi|731419625|ref|XP_002283796.2|4.85E-19PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Vitis vinifera]
Swissprottr|Q9LXF2|PP385_ARATH5.00E-15Pentatricopeptide repeat-containing protein At5g15300
trEMBLtr|F6H5U9|F6H5U9_VITVI2.00E-19Putative uncharacterized protein {ECO:0000313|EMBL:CCB47570.1}
TAIRAT5G153002.00E-14Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004828166422817621-
Transcript Sequence

Network for GWHGAAEX013696

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.440
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata0.000
SRR5643514five period of Gastrodia elata1.080
SRR5643515five period of Gastrodia elata0.000
SRR5643524five period of Gastrodia elata0.530
SRR5643525five period of Gastrodia elata2.000
SRR5643528five period of Gastrodia elata0.710
SRR5643658five period of Gastrodia elata1.630
SRR5643659five period of Gastrodia elata1.070
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.650
SRR5643663five period of Gastrodia elata1.380
SRR5643664five period of Gastrodia elata0.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.740
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_13.200
SRR6049657Rhizomagastrodiae_C368-T07_good_12.810
SRR6049658Rhizomagastrodiae_C368-T04_good_13.170
SRR6049659Rhizomagastrodiae_C368-T04_good_11.860
SRR6049660Rhizomagastrodiae_C368-T01_good_11.450
SRR6049661Rhizomagastrodiae_C368-T04_good_11.770
SRR6049662Rhizomagastrodiae_C368-T01_good_10.670
SRR6049663Rhizomagastrodiae_C368-T01_good_11.960
SRR6049664Rhizomagastrodiae_C368-T10_good_11.980
SRR6049665Rhizomagastrodiae_C368-T10_good_11.980
SRP279888GastroGastrodia elata tuber 1.15
JuvenJuvenile tuber0.00
Mother_GastroMother tuber of Gastrodia elata 0.00
Mother_JuvenMother tuber of Juvenile 2.16