Detail information of GWHGAAEX013699/evm.TU.scaffold_52.48


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34593.00E-64Small nuclear ribonucleoprotein (snRNP) Sm core protein
nrgi|743830106|ref|XP_010934328.1|2.72E-63PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform X1 [Elaeis guineensis]
Swissprottr|Q9C6K5|LSM3B_ARATH3.00E-10Sm-like protein LSM3B {ECO:0000305}
trEMBLtr|B3TLL8|B3TLL8_ELAGV1.00E-63Small nuclear ribonucleoprotein-like protein {ECO:0000313|EMBL:ACF06449.1}
TAIRAT3G628403.00E-64Small nuclear ribonucleoprotein family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004830250423032413+
Transcript Sequence

Network for GWHGAAEX013699

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.21LSM671415.50E-19
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K11096SNRPD2, SMD2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0008380Biological ProcessRNA splicing
GO:0030532Cellular Componentsmall nuclear ribonucleoprotein complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.170
SRR2545915Juvenile tuber12.940
SRP108465SRR5643513five period of Gastrodia elata18.770
SRR5643514five period of Gastrodia elata14.890
SRR5643515five period of Gastrodia elata14.670
SRR5643524five period of Gastrodia elata16.310
SRR5643525five period of Gastrodia elata8.140
SRR5643528five period of Gastrodia elata11.590
SRR5643658five period of Gastrodia elata9.880
SRR5643659five period of Gastrodia elata18.520
SRR5643660five period of Gastrodia elata22.770
SRR5643661five period of Gastrodia elata21.810
SRR5643662five period of Gastrodia elata19.740
SRR5643663five period of Gastrodia elata21.860
SRR5643664five period of Gastrodia elata20.690
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.680
SRR6049655Rhizomagastrodiae_C368-T10_good_16.960
SRR6049656Rhizomagastrodiae_C368-T07_good_111.930
SRR6049657Rhizomagastrodiae_C368-T07_good_19.990
SRR6049658Rhizomagastrodiae_C368-T04_good_19.730
SRR6049659Rhizomagastrodiae_C368-T04_good_110.570
SRR6049660Rhizomagastrodiae_C368-T01_good_111.240
SRR6049661Rhizomagastrodiae_C368-T04_good_111.850
SRR6049662Rhizomagastrodiae_C368-T01_good_112.210
SRR6049663Rhizomagastrodiae_C368-T01_good_112.270
SRR6049664Rhizomagastrodiae_C368-T10_good_112.560
SRR6049665Rhizomagastrodiae_C368-T10_good_112.560
SRP279888GastroGastrodia elata tuber 9.58
JuvenJuvenile tuber9.05
Mother_GastroMother tuber of Gastrodia elata 3.14
Mother_JuvenMother tuber of Juvenile 4.98