Detail information of GWHGAAEX013700/evm.TU.scaffold_52.53
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-111 | FOG: PPR repeat |
| nr | gi|672164979|ref|XP_008802383.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g79540 [Phoenix dactylifera] |
| Swissprot | tr|Q9SAJ5|PP133_ARATH | 6.00E-112 | Pentatricopeptide repeat-containing protein At1g79540 |
| trEMBL | tr|W1PQG8|W1PQG8_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN09961.1} |
| TAIR | AT1G79540 | 2.00E-111 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000048 | 3327749 | 3330315 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013700
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 139 | 166 | 0.0023 |
| PF13041.5 | PPR_2 | 170 | 219 | 4.70E-15 |
| PF13041.5 | PPR_2 | 235 | 270 | 3.60E-10 |
| PF13041.5 | PPR_2 | 291 | 340 | 1.90E-16 |
| PF13041.5 | PPR_2 | 409 | 457 | 3.40E-16 |
| PF01535.19 | PPR | 555 | 581 | 1.1 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.220 |
| SRR2545915 | Juvenile tuber | 2.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.190 |
| SRR5643514 | five period of Gastrodia elata | 3.490 | |
| SRR5643515 | five period of Gastrodia elata | 3.050 | |
| SRR5643524 | five period of Gastrodia elata | 3.070 | |
| SRR5643525 | five period of Gastrodia elata | 1.870 | |
| SRR5643528 | five period of Gastrodia elata | 2.330 | |
| SRR5643658 | five period of Gastrodia elata | 1.450 | |
| SRR5643659 | five period of Gastrodia elata | 4.070 | |
| SRR5643660 | five period of Gastrodia elata | 3.130 | |
| SRR5643661 | five period of Gastrodia elata | 3.220 | |
| SRR5643662 | five period of Gastrodia elata | 3.970 | |
| SRR5643663 | five period of Gastrodia elata | 3.030 | |
| SRR5643664 | five period of Gastrodia elata | 3.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.11 |
| Juven | Juvenile tuber | 3.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.62 | |
| Mother_Juven | Mother tuber of Juvenile | 1.86 |