Detail information of GWHGAAEX013704/evm.TU.scaffold_52.62


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29536.00E-50mRNA-binding protein Encore
nrgi|743764113|ref|XP_010912260.1|0PREDICTED: R3H domain-containing protein 1-like [Elaeis guineensis]
trEMBLtr|M0T8D5|M0T8D5_MUSAM3.00E-163Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P19370_001}
TAIRAT3G566806.00E-50Single-stranded nucleic acid binding R3H protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004837806503803669-
Transcript Sequence

Network for GWHGAAEX013704

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01424.21R3H1021558.40E-11
PF12752.6SUZ1932422.10E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.650
SRR2545915Juvenile tuber22.350
SRP108465SRR5643513five period of Gastrodia elata19.420
SRR5643514five period of Gastrodia elata15.940
SRR5643515five period of Gastrodia elata15.410
SRR5643524five period of Gastrodia elata17.390
SRR5643525five period of Gastrodia elata19.440
SRR5643528five period of Gastrodia elata23.980
SRR5643658five period of Gastrodia elata24.470
SRR5643659five period of Gastrodia elata17.480
SRR5643660five period of Gastrodia elata16.620
SRR5643661five period of Gastrodia elata15.510
SRR5643662five period of Gastrodia elata18.570
SRR5643663five period of Gastrodia elata15.990
SRR5643664five period of Gastrodia elata12.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.670
SRR6049655Rhizomagastrodiae_C368-T10_good_130.910
SRR6049656Rhizomagastrodiae_C368-T07_good_117.310
SRR6049657Rhizomagastrodiae_C368-T07_good_120.470
SRR6049658Rhizomagastrodiae_C368-T04_good_120.310
SRR6049659Rhizomagastrodiae_C368-T04_good_123.270
SRR6049660Rhizomagastrodiae_C368-T01_good_120.190
SRR6049661Rhizomagastrodiae_C368-T04_good_121.440
SRR6049662Rhizomagastrodiae_C368-T01_good_119.040
SRR6049663Rhizomagastrodiae_C368-T01_good_117.530
SRR6049664Rhizomagastrodiae_C368-T10_good_122.040
SRR6049665Rhizomagastrodiae_C368-T10_good_122.040
SRP279888GastroGastrodia elata tuber 18.38
JuvenJuvenile tuber23.36
Mother_GastroMother tuber of Gastrodia elata 32.26
Mother_JuvenMother tuber of Juvenile 39.99