Detail information of GWHGAAEX013705/evm.TU.scaffold_52.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|147919299|ref|YP_686965.1| | 2.00E-51 | 30S ribosomal protein S11P [Methanocella arvoryzae MRE50] |
| KOG | KOG0407 | 5.00E-89 | 40S ribosomal protein S14 |
| nr | gi|695007014|ref|XP_009390038.1| | 2.15E-91 | PREDICTED: 40S ribosomal protein S14 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P19951|RS142_MAIZE | 4.00E-91 | 40S ribosomal protein S14 |
| trEMBL | tr|I1PL30|I1PL30_ORYGL | 2.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA04G0089900.1} |
| TAIR | AT3G11510 | 5.00E-89 | Ribosomal protein S11 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000048 | 3879163 | 3890216 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013705
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00411.18 | Ribosomal_S11 | 29 | 147 | 2.60E-48 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02955 | RP-S14e, RPS14 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 159.230 |
| SRR2545915 | Juvenile tuber | 164.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 248.030 |
| SRR5643514 | five period of Gastrodia elata | 246.340 | |
| SRR5643515 | five period of Gastrodia elata | 219.940 | |
| SRR5643524 | five period of Gastrodia elata | 238.240 | |
| SRR5643525 | five period of Gastrodia elata | 215.240 | |
| SRR5643528 | five period of Gastrodia elata | 193.230 | |
| SRR5643658 | five period of Gastrodia elata | 167.150 | |
| SRR5643659 | five period of Gastrodia elata | 261.840 | |
| SRR5643660 | five period of Gastrodia elata | 275.250 | |
| SRR5643661 | five period of Gastrodia elata | 285.260 | |
| SRR5643662 | five period of Gastrodia elata | 243.360 | |
| SRR5643663 | five period of Gastrodia elata | 240.290 | |
| SRR5643664 | five period of Gastrodia elata | 248.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 182.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 224.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 188.340 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 165.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 119.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 95.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 147.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 111.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 170.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 152.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 240.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 240.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 207.87 |
| Juven | Juvenile tuber | 304.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 149.26 | |
| Mother_Juven | Mother tuber of Juvenile | 209.27 |