Gene detail

Detail information of GWHGAAEX013708/evm.TU.scaffold_52.74

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|220919241\|ref\|YP_002494545.1\|	7.00E-23	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
KOG	KOG1237	0	H+/oligopeptide symporter
nr	gi\|695057391\|ref\|XP_009416965.1\|	0	PREDICTED: protein NRT1/ PTR FAMILY 4.3-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q93VV5\|PTR16_ARATH	0	Protein NRT1/ PTR FAMILY 4.3
trEMBL	tr\|A0A061FJS3\|A0A061FJS3_THECC	0	Major facilitator superfamily protein {ECO:0000313\|EMBL:EOY16932.1}
TAIR	AT1G59740	0	Major facilitator superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000048	4401758	4406299	-

Transcript Sequence
>GWHTAAEX013708 AAAATAGTTTAAACTAATATCATTATAAGATGTTTTTCTTACATTAAAATATTGTTAATATAATGTACTAAAAAAAAGTTAGGTTCTAATAATTGATTTCTGGGTATCAGTTTGGTTGGGTATCTCTTTTTCCTCTCGATAGTTAGAATTTGGTCGGCTTTCCTCATCTATAAATAACGGCACTCAATTAAGCTGTTTCTAACTTACAGCCCACCATTAAAAATATCTATATTTCAATCAAGCTCAAGCTATGGAGACCGACCTCCAATTAGACTGGAGAGGCCGCCCCTGCAAACCGAGCAGGCATGGAGGCATGAGGGCTGCTCTCTTTGTTCTAGGAATTCAAGCTTTTGAAATTATGGCTATAGCTGCTGTGGGAAATAATCTCATCACCTATGTGTTCGATGATATGCACTTTCCACTGTCAAAGGCAGCCAATATTGTCACAAACTTTATAGGCACTGTGTTTGTCCTCTCCCTTCTTGGTGGCTTTCTATCTGATTCTTATCTTGGCAGCTTCTGGACTATGCTAATATTTGGATTTGTCGAGCTTTCTGGTTTTATTCTGCTATCAGTACAAGCACATCTTCCTCAACTGAGGCCACCCAAATGCAACATGATGTCAAAAGAGGGGCTCTGCATCGAGGCAAATGGCATCAAAGCTGCAATATTCTTTGTAGCACTTTATCTTGTTGCTTTGGGCAGTGGCTGCTTAAAACCCAATATGATCTCTCATGGAGCTGATCAGTTCATGAAGGGAGATCCCAAACAGTCAAAGAAGCTGTCAACATACTTCAACTCTGCATACTTCAGCTTCTGCATTGGTGAGCTCATAGCACTCACCGTTCTAGTTTGGGTTCAAACAAGATCAGGAATGGACATCGGCTTCGCCGTCTCGGCAGCGGCCATGGCAATGGGTCTTATGAGTTTGATCTTTGGGATGGCTTTCTACAGGAACAGGCCTCCTCAAGGAAGCATCTTTACTCCAATGGCAAGAGTATTCGTTGCTGCCATCTACAAGAGAAAGCAAATTTGTCCCTCTAATAATGCAAATAAGCAGTCGGCCTTTTCTAATGCATCTTCCAACACTGGAAAGCTAACGCCCACTGAAAGATTCAGGTTCCTGGACAAAGCCTGCATTCAACTTCAGAGCAGCGGCAGAGAAAGCCCATGGCAACTCTGCACAGTAGCAGAAGTGGAGCAAGTGAAGATAATAATTTCTGTAATTCCAATTTTTGCTTGCACCATAGTCTTCAACACCATTTTAGCCCAACTGCAAACATTTTCAGTTGAACAAGGAAGGGCAATGAACACTCGCTTAAGAAACTTTAGCATTCCACCTGCATCTCTCCAAGCCATCCCCTACTTAATCCTCATGATCCTCGTCCCTGTCTACGAAATGGCCTTTGTCCACTTTGCACGAAGGATGACAGGGCATGATTCAGGCATCACCCCTCTTCAGAGAATTGGCATCGGCCTCTTCTCTGTCACATTCTCCATGGTTGCTGCTGCTATTATAGAGAAGAGGAGAAGAGAAACTTTGTTGAAAGAAAGCAAGCTGCTTTACATATTTTGGATTACACCTCAGTTCCTTTTATTTGGAATATCTGAAATGTTCACTGCTGTGGGACTTATTGAGTTCTTTTACAAGCAGTCTCTGGCAGGAATGCAGTCCTCTCTCACTGCAATGACTTACTGCTCTTACTCATTTGGATTCTACTTTAGCACTGTGCTGGTTTCTTTGATAAATAAGATCACTAGTTCAGAATCTTATAGTGGTTGGCTTGGTGATAATGATCTGAATAAGGATAGACTTGACTTGTTTTACTGGGTTCTGGCATGTCTTAGCCTAATCAATTTCTTCAACTATTTGTTTTGGTCCAGATGGTACTGCAATAATGCATCTGTAGCAGAAAATTTTGCTTCGAAGCAGGTTGGAGAAGATAGCATATAGTTATGAATAACTGAAGCTTAGGAAATTATATTTATCTCTTTTAGGATTAACATTGTAATGTAGGCGTAAATTTAGAAATGTTTAAGCAAAATAGAATGCAATGATATAAACATTTCGCCCAAATCAGGAAGGAATATAGTTGGGTCTAATTCCTACTTTGAAGAAAATGATGGGTTTATCGTTTTGCTTCTTATTTTGCTTTAAAGGTTTTTTGTATAGAGCTAATTTACTCTATGTACTTAGTGTTTAAAGAAGAGTTTGGTCAAATAGCATTATTAATTTATGTGTGTAATTTATAAAGCTTATACTCTTTCTTGCACTTAAGTATTTCTGCTGTTGTTGTTTGTCTGTTGAAAGAGAAATCAAAGTGATTTTGTAGCGCAGATCTGTAGTGGTTGGCTCACTGGGGGGTATATTTTTTATTTTATCAAATGTGGAAGGAAAAAAATTCATGTACGGCAATTGTACATTATATTAAATATTGCCTTTAATTGATTAGATTATGACTTTGATTATTTTCTGCATGAGAATTTTATATACATGTGCTACATTAGGGTATACTAAACTTCGGATGCATTCTTTTCAATAAATGTACAAAGATGTAATTAACCAGTCAAACTCCCATCAATCTGTATTTGTGGTTCTCTTCAGCTATGCAGACATCATCACCCACAAGTTATTCTTGAATTTGTTAAGAAACTTAGCATCTTATCCATGCATGCATGAAGAATAATCTGGTCACTTCTACTCTTTATCATAGGATACCCTCTTATTAAATCCATAGTAATACTATCCCGATATTTTGTAATGGTGTGCATAGATTCCTTTTTAGCTATAATTAATGTACAATTGCAAACTCATTCTTGAACAAACAATGCAAGTCTTCTTACTTCAATATAAATTTTTTTGTGGGTTCGCTTATGTGTAATCGGTGGGATTTAAACCAATGACATGGGATAACAAATCCTGAGCCTC

Network for GWHGAAEX013708

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module14

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00854.20	PTR2	90	511	3.50E-90

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0022857	Molecular Function	transmembrane transporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.700
SRP064423	SRR2545915	Juvenile tuber	17.230
SRP108465	SRR5643513	five period of Gastrodia elata	14.120
	SRR5643514	five period of Gastrodia elata	8.150
	SRR5643515	five period of Gastrodia elata	14.070
	SRR5643524	five period of Gastrodia elata	14.510
	SRR5643525	five period of Gastrodia elata	48.410
	SRR5643528	five period of Gastrodia elata	22.130
	SRR5643658	five period of Gastrodia elata	45.580
	SRR5643659	five period of Gastrodia elata	17.330
	SRR5643660	five period of Gastrodia elata	6.730
	SRR5643661	five period of Gastrodia elata	7.780
	SRR5643662	five period of Gastrodia elata	7.690
	SRR5643663	five period of Gastrodia elata	9.620
	SRR5643664	five period of Gastrodia elata	4.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.240
SRP279888	Gastro	Gastrodia elata tuber	8.11
	Juven	Juvenile tuber	3.26
	Mother_Gastro	Mother tuber of Gastrodia elata	39.77
	Mother_Juven	Mother tuber of Juvenile	3.54